LOCUS BC111703 5311 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens cadherin, EGF LAG seven-pass G-type receptor 3
(flamingo homolog, Drosophila), mRNA (cDNA clone IMAGE:40068067),
with apparent retained intron.
ACCESSION BC111703
VERSION BC111703.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5311)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5311)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 17 Row: o Column: 5
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..5311
/db_xref="H-InvDB:HIT000386647"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40068067"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag:
GATATGAGAAGGGCGAATTCAGGCCT"
BASE COUNT 962 a 1756 c 1390 g 1203 t
ORIGIN
1 tctcctcctt ccgtgccctc ccttgtggct cccatacccc tgtgttttcc ccacgtgtcc
61 tcatggctct ttgactgctc tcctgtttct ttgtgggacc tcccatctcc cccagtgtcc
121 tccagagacc tccatgttcc cgtgtgagtt cctttttttc acgtttcgtg tgtggcccct
181 gtgtgtcctc ccgtgttccc tgcatgagtc ctacatgagc cttgcatgtc ctcctgtgtc
241 ttcccatgtc cccacagcag gacccttcgc agctccttcc tgctgcttct gctggtcagt
301 gcctcctggc tctttgggct cctggcagtc aaccacagca tcctagcctt ccactacctc
361 catgctggac tctgcggcct ccaggtgact ctggtgcccc tcccttgccc cagaaccagg
421 tgggccttca gtaggctggg gccatcccta ggcagacgtt gaccctaggc ctggagctga
481 ctcttactgg ataactttgc caggctgggt actaccccag accagacact ggccctagct
541 gctgccccca ggcctggagc tgactctaac ttaggcactg atcccagact gagtgctgat
601 cttggatcga ccttcaccaa caccaaggct cccgacccct tgctgatcca caccgacctt
661 acagactcca gccactcctg ctgctccatc ctctcccctg ctgaccttcc ccaactccct
721 tactgagtcc cgcatgggct cctcactgac ccacactagc ctacagtgac tgaccccatt
781 gctgacccac agtgacttat actggtccct gattgatccc tgccgactct gctttgaccc
841 tcgctgaccc acagggcctg gcggtgctgc tgctcttctg tgtcctaaat gcagatgctc
901 gggctgcctg gatgccagcc tgtctgggca ggaaggcagc gcctgaggag gcaaggccag
961 cacctgggct ggtgagtcgg gatgggggcc ctgagaagcc agagttttag gctgcttcag
1021 ggttagctca cactctgtcc ctaccacccc cagggacctg gggcctacaa caacacggct
1081 ctctttgagg agagtggcct catccgcatc actctgggcg cctccaccgt ctcctctgtg
1141 agcagtgccc gctccggccg gacccaggac caggacagcc agcggggccg cagctacctc
1201 agggacaatg tcctggttcg acatggctca gccgctgacc acactgacca cagcctccag
1261 gctcatgctg gccccactga cctggacgtg gccatgttcc atcgagatgc tggtggagtt
1321 ggggcctggg gcagggagga gggaggcaga ggatctctcc ccatcccctt ttcttctacc
1381 ccatactggg agcagtggct gactggggtg ggacgatctc ccccagggtc cctgcctcag
1441 gaggcaccta cctctccagc cctggttctc ccagtccact cctgattcgt ccttccctct
1501 gataagtccc agcccttctg ctgctacctc cacttcaagc cccggttcct gtccccaacc
1561 ctaaccccct tgccgtaccc acctctagac cctcaactcc aaattccctt atctccaagt
1621 cccttacctc tgaaagtact tctgactttc ccaactccag gcgcagactc cgactctgac
1681 agtgacctgt ccttggagga ggagaggagt ctctccattc catcttcaga aagcgaggac
1741 aatggccgga cgcgggggcg cttccaacgg ccactctgcc gagcagccca gagtgagagg
1801 ctcctcaccc accccaaaga tgtggatggc aatgacctcc tgtcctactg gccagccctg
1861 ggggagtgcg aggcagcccc ctgtgctctg cagacttggg gctctgaaag gcgcctgggg
1921 ctggacacca gcaaggatgc agctaacaac aaccagccag acccggccct gaccagtggg
1981 gatgagactt ctctgggccg ggcccagcgc cagaggaaag gtacagtccc tgagccctgg
2041 cccacaccgc agacacgctg ggggctgctc atgccctgag ccaagggatt gcagcttcct
2101 catcccaaac tgagagctct tcttactctg acctagggcg cttctgcttc tctagcctgc
2161 ttcacggtcc tcagggactg ctcctgtcct gacctgggaa ttctctgtcc ccctctaccc
2221 tggccagcac cacaggggga ccacaggcga ccactcctgc cccagcccat ctgtttttca
2281 gagaccctag gagctgcttc cccctgcccc ccacccagat cccagagccc gtgctctgat
2341 ctggaagatt tctgccccct actctgcttt tatggggacc cggagaagag gtttctgccc
2401 tcacccttgc atcacaggga cctggggact gctcctgtcc aacccggggg gttcctgcat
2461 ttcagccagg cctgcattgt caggacctga gggctgcccc tcttctgacc tcagggagtt
2521 tgccccatcc cctgcaccat gagacctgcc cgccctcccc ctgccccggg accacaactg
2581 gaagatgact gcccttccac tctgacccct gtcctgctgc ctctctggga ccaccagggt
2641 tgcctctgct gctccccaag gggttcctgc tcccatccct gtgttggaag gatcccaagg
2701 gctgccacac ccctagactc agcaattcct gcctgccctc cccctcccac acaaaccctg
2761 ccccccattt tcttcctctc acaggcatcc tgaagaaccg gttgcaatac ccactggtgc
2821 cacagacccg aggtgcccct gagctgtcct ggtgccgtgc agccaccttg ggccaccgtg
2881 ctgtgccagc tgcctcttac ggtcgcatct atgctggcgg gggcacgggc agcctttcac
2941 agccagccag ccgctactct tctagagaac agctggacct gctcctccgg cggcaactga
3001 gccgtgagcg actagaggaa gcccctgccc ctgttctacg tcccctgagc cggccagggt
3061 cccaggaatg catggatgct gcaccaggcc gactggagcc caaagatcgg ggcagcaccc
3121 tgccacggag gcagccacct cgggactacc ctggcgccat ggctggccgc ttcgggtcac
3181 gggatgcgct cgacttaggg gcacctcgag agtggttgag cacgctgcct ccgccccgcc
3241 gcacccggga ccttgaccca cagcccccac ctctgcccct gtctccccag cggcaactct
3301 caagggaccc cctcttgcca tcccggccgc tggactctct gtctaggagc tcgaactctc
3361 gggagcagct ggaccaggtg cctagccggc acccctcacg agaagccctt gggccactcc
3421 cgcagctgct cagagctagg gaggactcgg tcagtggccc cagccatggc ccctccacag
3481 aacagttgga cattctttcc tccatccttg cctctttcaa ctcctcggcc ctctcctctg
3541 tgcaatcttc aagcacaccc ttgggccctc acaccactgc cacaccttct gccacagcct
3601 ctgtgcttgg gccctccacg ccacgttctg ccacgtctca cagcatctcg gagctgtcgc
3661 cagactcaga agttcccaga agtgagggtc actcctgagg ggatgacggc gtggacgagg
3721 aacagctgag ggcgacagag gatctaggct aacaggagag actccaggag tgggggcaga
3781 tcccaaggca gcctcctgct ccccagtggt gggtgcccca gctctacctg gtgtggcagg
3841 gctgaggctc catgtgcatc tgtgagcatg cgtgtgacag gtgcagagac gggggactgg
3901 agggagactt ttatacgttt tgtacctttg taaccagaga gatgcttatg ttatttttca
3961 gcttttctgt ctcctggggg gtttgaggct gggctgggag ggggagggag atagagggag
4021 agatgcagtt tgaccccatt tgggtcctga gcaaacccta tgctcatctc tctctccttc
4081 ctggggtgga ctcagatggg tgggacacat gccttcctcc ccctattcca cccccaagtt
4141 gatctgagta tcgtcagggg cccaaagtac agaattgttc tttgcttttt attgaatgct
4201 ccaaaggcca aacttctggg gctgggggtt ggtcttggaa acaggggtcc tctgacttcc
4261 tcatgggggc ttgctcatac cgcccctcct ggtggatgtg tgtgtttatt atgtggagtc
4321 cctgccactt actgccttat gacctaggac tgatgctgtg gggtgctggt ggagcagctg
4381 atgtcgtgtt tacagagcaa ggcttccctg tctcccacgg ggaggggctc gggcctctag
4441 tcagacattc ctgcagaggg tcggtggagg ggtcattcac ctgcccctgc agcaagcaaa
4501 agttgtctgt ggtgccattt gattccctga cactgccccc tgcttgaatt gattccgaag
4561 ggtagggtgg gaaggtgagc aaagggagca gaaacaaggg aattcaagac ccagaatgta
4621 ggtgccactg cctcctatgt ttacaggatc ctccgtggcc ctaggcacct gggctgcagg
4681 aagtgactcc gttccactcc tcctttattc ccttaaaaag ggaaaaatga ctgttacgac
4741 cctgttcaca aaactcttac ttttgctatt ttgtctgctg tccagaactg aagactttaa
4801 aattttgtta ctgtttacaa gtccagattc aaaaaatgtt tttactttgt ttacaactca
4861 aaactttgag ttttacactt tgtttacagt agataatttt ttttcctttg tttccaagtg
4921 aaaggtaggg aaagtgggag agggacttgg aggacccacc tgtgaggacc ctgacctggc
4981 catcttgagg ggttttctaa cccccaggtc tcccaggccg aaggtcagcc ttgagtcccg
5041 tttaacagca gatccagaag accttgagag taggcgtcct ctaaccacgg gggagagtgg
5101 ctgtgcaggg ctggggggtg gtctgtgcag acacctcctc acccaccacc ccatgcatac
5161 tcttgggaag cagcttcctg ggagattaga aattctactt ccctgactgg agctaaatcc
5221 caccagccag gacccaaact ctccttaccg agaaggaccc cagctcttga agggctgagt
5281 ggcctgctgg gggtgggagg gtgtggtctt g
//