LOCUS BC111524 2541 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens solute carrier family 5 (choline transporter), member
7, mRNA (cDNA clone MGC:126299 IMAGE:40034612), complete cds.
ACCESSION BC111524
VERSION BC111524.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2541)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (28-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 14 Row: k Column: 1.
FEATURES Location/Qualifiers
source 1..2541
/db_xref="H-InvDB:HIT000339933"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126299 IMAGE:40034612"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: ACATACTATG sequenced
from the forward primer"
gene 1..2541
/gene="SLC5A7"
/gene_synonym="CHT"
/gene_synonym="CHT1"
/gene_synonym="hCHT"
/db_xref="GeneID:60482"
/db_xref="HGNC:HGNC:14025"
/db_xref="MIM:608761"
CDS 948..1949
/gene="SLC5A7"
/gene_synonym="CHT"
/gene_synonym="CHT1"
/gene_synonym="hCHT"
/codon_start=1
/product="SLC5A7 protein"
/protein_id="AAI11525.1"
/db_xref="GeneID:60482"
/db_xref="HGNC:HGNC:14025"
/db_xref="MIM:608761"
/translation="MLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILI
GAIGASTDWNQTAYGLPDPKTTEEADMILPIVLQYLCPVYISFFGLGAVSAAVMSSAD
SSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWY
LSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGY
YPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSE
ENMDKTILVKNENIKLDELALVKPRQSMTLSSTFTNKEAFLDVDSSPEGSGTEDNLQ"
BASE COUNT 669 a 563 c 569 g 740 t
ORIGIN
1 tgtcaactct gcgcgctccc aggttcttgg agacgccgag tgaggagccg ccctgaccgc
61 ccggccccgc tccgcactgc accccgaccc accccgcacc ctccctttct gcaccctcgc
121 acccacaccc ctcgcggttc cagggggcgg cggccccggg cggagcgctt tcgcgtgcag
181 ccaccactcc agaagactta atgaagtagc cagctgcaga agaatctgga tcattagata
241 aaaatggctt tccatgtgga aggactgata gctatcatcg tgttctacct tctaattttg
301 ctggttggaa tatgggctgc ctggagaacc aaaaacagtg gcagcgcaga agagcgcagc
361 gaagccatca tagttggtgg ccgagatatt ggtttattgg ttggtggatt taccatgaca
421 gctacctggg tcggaggagg gtatatcaat ggcacagctg aagcagttta tgtaccaggt
481 tatggcctag cttgggctca ggcaccaatt ggatattctc ttagtctgat tttaggtggc
541 ctgttctttg caaaacctat gcgttcaaag gggtatgtga ccatgttaga cccgtttcag
601 caaatctatg gaaaacgcat gggcggactc ctgtttattc ctgcactgat gggagaaatg
661 ttctgggctg cagcaatttt ctctgctttg ggagccacca tcagcgtgat catcgatgtg
721 gatatgcaca tttctgtcat catctctgca ctcattgcca ctctgtacac actggtggga
781 gggctctatt ctgtggccta cactgatgtc gttcagctct tttgcatttt tgtagggctg
841 tcgcagacat cgggttcact gctgtgcatg ccaaatacca aaagccgtgg ctgggaactg
901 ttgactcatc tgaagtctac tcttggcttg atagttttct gttgttgatg ctgggtggaa
961 tcccatggca agcatacttt cagagggttc tctcttcttc ctcagccacc tatgctcaag
1021 tgctgtcctt cctggcagct ttcgggtgcc tggtgatggc catcccagcc atactcattg
1081 gggccattgg agcatcaaca gactggaacc agactgcata tgggcttcca gatcccaaga
1141 ctacagaaga ggcagacatg attttaccaa ttgttctgca gtatctctgc cctgtgtata
1201 tttctttctt tggtcttggt gcagtttctg ctgctgttat gtcatcagca gattcttcca
1261 tcttgtcagc aagttccatg tttgcacgga acatctacca gctttccttc agacaaaatg
1321 cttcggacaa agaaatcgtt tgggttatgc gaatcacagt gtttgtgttt ggagcatctg
1381 caacagccat ggccttgctg acgaaaactg tgtatgggct ctggtacctc agttctgacc
1441 ttgtttacat cgttatcttc ccccagctgc tttgtgtact ctttgttaag ggaaccaaca
1501 cctatggggc cgtggcaggt tatgtttctg gcctcttcct gagaataact ggaggggagc
1561 catatctgta tcttcagccc ttgatcttct accctggcta ttaccctgat gataatggta
1621 tatataatca gaaatttcca tttaaaacac ttgccatggt tacatcattc ttaaccaaca
1681 tttgcatctc ctatctagcc aagtatctat ttgaaagtgg aaccttgcca cctaaattag
1741 atgtatttga tgctgttgtt gcaagacaca gtgaagaaaa catggataag acaattcttg
1801 tcaaaaatga aaatattaaa ttagatgaac ttgcacttgt gaagccacga cagagcatga
1861 ccctcagctc aactttcacc aataaagagg ccttccttga tgttgattcc agtccagaag
1921 ggtctgggac tgaagataat ttacagtgac cccatctaaa taaaatactg cttttgcaaa
1981 cagaacactg taatagggta gttctggaga gatggtatgc agcatacaaa aatatattaa
2041 aaatataaac aatgttcagg agagtaaaaa ttcatataaa gtgcaattgc acaaatacaa
2101 gccaagctag aaggaagcac ctatgaaagc aacaactttg tttctcatcc atagtagtat
2161 tgattttgat gctagatagt tttgctaggt ataaaaaata agtaaagttc cacttagaga
2221 acaaagggcc aaatagagtt tttatatttg ttatgataaa aggaagtaga tgtgaaaaag
2281 cctaagaaaa aggaaattgg acagttttga tacaaacttt gtttgctaat gcactgatga
2341 gtctagtttc attatagcac gaagctatga gaataacttc agtcactccc ttgaatggtg
2401 caatgaatta accagctgat ttttcttagt gtgatgatta accccttctt tcatgttctg
2461 agctataaca tttgctgaat atgcaatttg ttattctttt attaatggca tgtaatattc
2521 tgagcacggg caaagaaaac a
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