LOCUS BC111040 4375 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens programmed cell death 11, mRNA (cDNA clone
IMAGE:5534097), partial cds.
ACCESSION BC111040
VERSION BC111040.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4375)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4375)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 233 Row: j Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70980548.
FEATURES Location/Qualifiers
source 1..4375
/db_xref="H-InvDB:HIT000339854"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5534097"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>4375
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="KIAA0185"
/gene_synonym="NFBP"
/db_xref="GeneID:22984"
/db_xref="HGNC:HGNC:13408"
CDS 43..>4375
/gene="PDCD11"
/gene_synonym="ALG-4"
/gene_synonym="KIAA0185"
/gene_synonym="NFBP"
/codon_start=1
/product="PDCD11 protein"
/protein_id="AAI11041.1"
/db_xref="GeneID:22984"
/db_xref="HGNC:HGNC:13408"
/translation="MANLEESFPRGGTRKIHKPEKAFQQSVEQDNLFDISTEEGSTKR
KKSQKGPAKTKKLKIEKRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISL
PNGLQGFVQVTEICDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITD
RGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLL
KAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLN
NLLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCV
HPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLA
YARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDI
EPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVL
LCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ
GLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAG
HSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHW
LQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIK
DYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLR
LSDCGLGDLAITSLLLLNQCLEELQGVRSLMSNRDSVLIQTLAEMTPGMFLDLVVQEV
LEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQDL
VNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQV
GQGVSLTLKTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKK
HTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTV
TARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQY
QAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALR
ATVVGPDSSKTLLCLSLTGPHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFH
MSDSYSETPLEDFVPQKVVRCYILSTADNVLTLSLRSSRTNPETKSKVEDPEINSIQD
IKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLT
ARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKKNQ
KRNEKKKK"
BASE COUNT 1157 a 1069 c 1179 g 970 t
ORIGIN
1 gtggtagctg ggtgcagacg ccgtggcgct ggagacccaa acatggcaaa cctggaagaa
61 agcttccccc gaggaggtac aagaaagatc cacaaaccag agaaagcttt ccagcagtca
121 gttgaacaag acaacttatt tgatatttct actgaagagg gatccaccaa aagaaaaaag
181 agccagaagg ggccagcaaa aacaaaaaag ttgaaaatcg aaaagagaga aagcagcaag
241 tccgcaagag agaagtttga aatccttagt gttgagtccc tgtgtgaggg aatgcgtatt
301 ttgggttgcg tgaaagaggt gaatgaactg gaactggtga ttagtctccc caatggcctc
361 cagggctttg tgcaagtcac tgaaatctgt gatgcctaca ccaaaaagct gaatgagcag
421 gtgacacaag aacaacctct gaaggaccta cttcacttgc ctgaactttt ctcacctgga
481 atgctggtaa gatgtgtggt gagcagtctg ggcatcacag acaggggcaa gaagagtgtc
541 aagctgtctc tgaaccccaa aaatgtcaac agagtgctga gtgctgaggc cctgaagcct
601 ggcatgctac ttacaggtac cgtatccagc ctggaagacc atggctacct agtggacatt
661 ggtgttgatg ggaccagagc ttttctgcca ctgctgaaag cccaggagta catcagacag
721 aagaacaaag gtgctaaact aaaggtgggt cagtacctga actgcattgt tgaaaaggtg
781 aaaggcaacg gaggagttgt tagtctgtct gttggtcact cagaggtttc tacggccatt
841 gctactgaac agcagagctg gaaccttaat aacttgctac caggactggt ggtcaaagct
901 caggtacaga aggtgactcc atttggcctt acgctaaact tcctcacatt cttcacgggc
961 gtggttgact ttatgcacct ggatcccaag aaagctggaa catatttctc aaatcaggca
1021 gtgagggcct gcatcctttg cgtccatcct cgaaccagag ttgtgcacct gagcctgcgc
1081 cccatcttcc tacagcctgg acgcccactc acccgactct cttgccagaa ccttggagca
1141 gtgctggatg atgttcctgt ccagggtttt ttcaaaaagg ctggggccac ctttaggctg
1201 aaggatgggg ttctggccta tgcccggctc agccatctct ctgattctaa gaacgtcttc
1261 aatcctgagg ccttcaagcc agggaacact cacaagtgta gaattattga ctacagccaa
1321 atggatgaac tggccttgct ctctctacga acgtctatta ttgaagctca gtaccttaga
1381 tatcatgaca tcgaacctgg ggcagtggta aagggcacag tgctaaccat aaagtcatat
1441 gggatgctgg tgaaggtggg cgagcagatg aggggcctgg tacctcccat gcacctggct
1501 gacatcctga tgaagaatcc ggagaagaag taccacatcg gggatgaggt caagtgccgg
1561 gttttgcttt gtgaccctga agccaagaag ctgatgatga ccctgaaaaa aaccctgatt
1621 gagtccaaac tacctgtcat tacctgctat gccgatgcca agcctggtct gcagacacat
1681 ggcttcatca tcagggtcaa ggactatggc tgcattgtga agttctacaa caatgtgcag
1741 ggactggtgc ccaagcatga gctcagtact gagtatatcc ctgacccgga gagagttttt
1801 tacactggcc aggtggtgaa ggttgtcgta ttgaactgtg agccatccaa agagaggatg
1861 ctcttatcct tcaagctgtc gagtgatcca gagccaaaga aagagcctgc aggacacagt
1921 cagaagaaag gaaaagccat taacattggg cagttggtag atgtgaaggt tttagagaag
1981 accaaagatg ggctggaggt ggctgtcctg ccccacaaca tccgtgcttt cctccccaca
2041 tctcatctgt cggaccacgt tgccaacggc ccattgttac atcattggct ccaggcaggt
2101 gacatccttc accgagtcct gtgtctgagc cagagcgagg ggcgtgttct tctttgcagg
2161 aagccagcct tggtctccac agtagaaggt ggccaggatc ccaagaactt ctcagaaatc
2221 catcctggaa tgctgctcat tggttttgtg aagagcatca aggactatgg cgtgttcatc
2281 cagttcccct caggtcttag cggactggcc ccaaaagcta tcatgagtga caaatttgtg
2341 acctccacaa gtgaccactt tgttgagggc cagacagtag cggcaaaggt gaccaatgtg
2401 gatgaggaga agcagcggat gctgctgtca ctgcggctgt cggactgtgg tctgggggac
2461 ttggctatca ccagcctcct cctcctgaat cagtgcctgg aggagctgca gggcgtgcgc
2521 agccttatga gcaaccgaga ctctgtgttg atccagacgc tggccgagat gaccccagga
2581 atgttccttg acctagtggt gcaggaggtg ttggaagatg gctctgtggt attcagtggg
2641 ggtccagtgc ccgacctggt cctgaaagcc agcagatacc atcgcgcagg gcaggaggtg
2701 gaatctgggc agaaaaagaa ggttgttatc ttaaatgttg atcttttgaa gttggaagtg
2761 cacgtttccc ttcaccagga cttggtgaat agaaaagcta gaaagctgag gaaaggcagc
2821 gaacaccagg cgattgtgca gcacttggag aagtcctttg ccattgcctc cttggtagag
2881 acgggccacc tggcagcttt ctccctgacc tctcacctca acgacacctt ccgctttgac
2941 tcagagaaat tgcaggtggg acagggtgtc tccctaaccc tcaagaccac agaaccagga
3001 gtgactggcc ttcttttggc tgtggagggg ccggctgcca agaggaccat gaggccgacc
3061 cagaaggact ctgagacagt tgatgaggat gaagaagtgg atccagctct gactgtaggg
3121 accataaaga agcacaccct ctccatcggg gacatggtca cagggactgt caagtccatt
3181 aagcctaccc atgtggttgt gactctggaa gatggcatta ttggctgtat ccatgcctcc
3241 cacattctag atgatgttcc agagggcacc tctcctacta ccaagctgaa ggttgggaag
3301 acggtcactg cccgagtgat tggcgggcga gacatgaaga cattcaagta tctcccaata
3361 agtcacccca gattcgttcg aaccatcccg gagctgagtg ttcggccaag tgagctggag
3421 gatggccaca ctgctcttaa cactcactct gttagcccca tggagaagat taaacagtac
3481 caggccggcc agactgttac ttgcttctta aagaaataca atgtggtgaa gaaatggctt
3541 gaggtggaga ttgccccaga catccggggg agaattccct tattgctcac ttctctgagc
3601 ttcaaggttc tgaagcatcc agataagaag ttccgggttg gccaggccct gagggccacc
3661 gttgttggcc cagattcctc caagaccctc ttatgtctgt ccctcacagg tcctcacaag
3721 cttgaggaag gggaagtggc catgggccga gtggtgaagg tgactcccaa cgaggggctg
3781 accgtctcct tcccctttgg gaagatagga acagtcagta tatttcacat gagtgactcc
3841 tactccgaga cgcccctgga agacttcgtc ccccagaagg ttgtcagatg ttacatcctg
3901 tccactgcag acaacgtatt gactttgtcg ctgcgatcat ccagaacaaa cccggagacg
3961 aaaagcaaag tagaagatcc agagattaac tccatccagg acattaagga agggcagctt
4021 ctgaggggct atgtagggtc catccagcca cacggtgtgt tctttcgcct tggcccctcc
4081 gttgtgggtt tggctcggta ctcccatgtc tcccagcaca gcccgtccaa gaaagccctt
4141 tataacaaac acctccctga agggaagctg ctcacagcca gggtcctacg ccttaaccac
4201 cagaagaacc tggtagagct gtctttcctc cccggagaca ctgggaagcc agacgtgctt
4261 tctgcttcct tggaagggca acttacaaag caagaggaga ggaaaacaga ggctgaggag
4321 agagaccaaa aaggggaaaa gaaaaatcag aaaaggaacg aaaaaaaaaa aaaaa
//