LOCUS BC110898 2746 bp mRNA linear HUM 26-JUN-2008
DEFINITION Homo sapiens zinc finger, HIT type 6, mRNA (cDNA clone MGC:131963
IMAGE:6012059), complete cds.
ACCESSION BC110898
VERSION BC110898.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2746)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2746)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 255 Row: j Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20149642.
FEATURES Location/Qualifiers
source 1..2746
/db_xref="H-InvDB:HIT000339788"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:131963 IMAGE:6012059"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2746
/gene="ZNHIT6"
/gene_synonym="BCD1"
/gene_synonym="NY-BR-75"
/db_xref="GeneID:54680"
/db_xref="HGNC:HGNC:26089"
CDS 68..1480
/gene="ZNHIT6"
/gene_synonym="BCD1"
/gene_synonym="NY-BR-75"
/codon_start=1
/product="zinc finger, HIT type 6"
/protein_id="AAI10899.1"
/db_xref="GeneID:54680"
/db_xref="HGNC:HGNC:26089"
/translation="MEFAAENEGKSGGGLHSVAEGVRLSPEPGREGVRDLAGAEEFGG
GEEGTGLTGIKEIGDGEEGSGQRPEEIPMDLTVVKQEIIDWPGTEGRLAGQWVEQEVE
DRPEVKDENAGVLEVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLE
IKQEEKFVGQCIKEELMHGECVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMS
RCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLS
DYRFLEDVARTADHISRDAFLKRPISNKYMYFMKNRARRQGINLKLLPNGFTKRKENS
TFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYIDPEKSDPVIRQRLK
AYIRSQTGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVIIEYPTLHVVLKGSNN
DMKVLHQVKSESTKNVGNEN"
BASE COUNT 879 a 460 c 648 g 759 t
ORIGIN
1 ctcctattgg tgtgcagcag ccacattgaa ggatagagtg gcagcagagg ccaaggatcg
61 tgagttgatg gagtttgctg ctgaaaatga agggaagtct gggggaggtc tccacagcgt
121 agctgagggg gtgcggctaa gtccagagcc tggcagggag ggagtaaggg acttagcagg
181 ggcggaggag ttcggcggcg gagaggaggg gacagggctg acagggataa aggagatagg
241 ggatggagag gaaggaagtg gacaaaggcc agaggaaata ccgatggacc taacggtagt
301 gaagcaggaa attatagact ggccaggtac agaaggcagg ttggctggcc agtgggtaga
361 acaggaggtg gaggataggc ctgaggtgaa ggatgagaac gcaggcgtat tggaggtgaa
421 gcaggagacg gatagtagtt tagtggtaaa agaagcgaag gtgggtgaac cagaggtaaa
481 ggaagagaag gtaaaggaag aggtaatgga ctggtcagaa gtgaaggaag agaaggataa
541 cttggagata aaacaggagg agaagtttgt tggtcaatgc ataaaagagg aattgatgca
601 tggagagtgt gtaaaagaag agaaggattt cctgaagaaa gaaatcgtgg atgatacaaa
661 ggtgaaagaa gagcctccga taaatcaccc ggtgggctgc aagcggaaac tggccatgtc
721 aaggtgtgag acttgtggta cagaagaagc aaagtacaga tgtccacgtt gtatgcgata
781 ttcctgcagt ttgccctgtg taaagaaaca caaagcagaa ctgacatgta atggagttcg
841 agataaaact gcatacattt caatacaaca gtttactgaa atgaatctcc taagtgatta
901 tcgatttttg gaagatgtgg caagaacagc ggaccatatt tctagagatg cttttttgaa
961 gagaccaata agcaataaat atatgtactt tatgaaaaat cgtgcccgga ggcaaggtat
1021 taacttaaaa cttctaccca atggattcac caagaggaag gagaattcaa ccttttttga
1081 taagaaaaaa caacagtttt gttggcatgt gaagctccag tttcctcaaa gtcaagctga
1141 gtacatagaa aaaagagtac cagatgataa aactattaat gaaatcctaa aaccttacat
1201 tgatcctgaa aagtctgatc ctgtaattcg tcaaaggttg aaagcctaca ttcgctctca
1261 gactggggtt cagattttaa tgaagattga atatatgcag caaaatttag taagatatta
1321 tgaactagat ccttataaaa gtctcctaga caatttgagg aacaaagtga tcattgagta
1381 tccaacatta catgtggtat tgaaaggatc caataatgac atgaaagttc ttcaccaagt
1441 gaagagtgaa tctaccaaga acgttggcaa tgaaaattga gcattttttc tggaagaaga
1501 aagtgaaaac ttccagacaa ctgcagcaga ctctgcattg atgggctgtt ggctgattgg
1561 ggtattgtca atgggtgatt ggaatttttt ctttgtatga aaaataagct taactctttt
1621 aaaaaatgta ttttataacc tcttgaatta attgacttgt aagacccatt tattcatatt
1681 aagaactctc ctttgcactt gatcagcata gtacttatta ggccctggct ttttaatatg
1741 cttaattgct taattccata aactgaaaac ttttttttct tttttctttc tttttttgag
1801 atggggtctt ggagtgcaag tggtatgagc atagcttcct caaattcctg ggctcgaatg
1861 gtcctctcac tgcagcctcc caacaggctg gtaccaccac actcagctaa gttttttgtt
1921 gttttttttt tttggtagag acagggttgc gctctttcgc ccaggctggt ctcaaatttg
1981 tggcctcaag caatccttcc acctcagact ccaaagcatt gggattacag gcatcagcca
2041 ccacacctgg ccttgaacat tttttatttg ttaatttcat gcgtgacgaa acccaaggat
2101 cacccatgtc aaccacaaag ttggcattcc ctttagtaga acctcactaa acggaaaggc
2161 tgtacaacgc accgtctagc cacaggagaa ctaatcttct atcagttgcc ctttcttctt
2221 tggagttttt atgtaactta cccttgtgag acaagttttc tacttgagaa actcctagta
2281 caatgtctta tactagaagc ctggataaat actattaact actgtttctt atattcactt
2341 cagaaaatca gtggctccac attgtttgag ccattagtga taacaaattt ggatctactt
2401 actcaagtct tatgaattct gtgcctttca tcacattcct agcccactct catcattact
2461 gcagaagggt gttgtgatga ccagttttat actgtgtttt gatatgtcta gcaataactt
2521 aaagaaaaaa aaacctggga aatcttcaac atgttattgg aacatatatg tatgtattaa
2581 tgtatataca tggcttaact tatacgttat ggcagctctg tatacagttt gatctcatgt
2641 actgaaaaaa aattcttaat tttattggag tttataccac tgtgaaactg caatatgact
2701 gtaagagagt aaaaagattg ttacatctat aaaaaaaaaa aaaaaa
//