LOCUS BC110821 2552 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens SIN3 homolog B, transcription regulator (yeast), mRNA
(cDNA clone IMAGE:5498101), complete cds.
ACCESSION BC110821
VERSION BC110821.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2552)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2552)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 255 Row: f Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52138512
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2552
/db_xref="H-InvDB:HIT000339712"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5498101"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2552
/gene="SIN3B"
/gene_synonym="KIAA0700"
/db_xref="GeneID:23309"
/db_xref="HGNC:HGNC:19354"
/db_xref="MIM:607777"
CDS 12..1073
/gene="SIN3B"
/gene_synonym="KIAA0700"
/codon_start=1
/product="SIN3B protein"
/protein_id="AAI10822.1"
/db_xref="GeneID:23309"
/db_xref="HGNC:HGNC:19354"
/db_xref="MIM:607777"
/translation="MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDA
LTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNA
FLPLGYRIDIPKNGKLNIQSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSV
EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVA
NLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLR
PVSAPAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALF
NQELVSGSELLQLVSPFLG"
BASE COUNT 588 a 660 c 668 g 636 t
ORIGIN
1 cgacttcgga catggcgcac gctggcggtg gcagcggtgg cagcggtgcc ggcggccccg
61 cgggccgggg gctgagcggc gcccgctggg gtcgctcggg ctccgcaggc cacgagaagc
121 tgccggtgca cgtagaagac gccctcacct atctggacca ggtgaagatc cgctttggca
181 gcgaccctgc cacctacaac ggcttcctgg agatcatgaa ggagttcaaa agccagagca
241 tcgatactcc tggagtcatc agacgtgtct cgcagctctt ccacgagcac cctgacctca
301 ttgttggatt caacgctttt cttcccctcg gatatagaat agacattccc aagaatggca
361 agttaaacat acagtcgcct ctgacaagcc aggagaattc gcacaaccac ggggacggtg
421 cagaggactt caagcagcag gtgccgtata aagaggacaa accccaggtg cccctggagt
481 ccgattccgt ggaattcaac aacgccatca gctatgtgaa taagattaaa acccgcttcc
541 tagaccaccc agaaatctac aggtcattcc tggagatcct gcacacgtac cagaaggagc
601 agctgaacac gaggggccgg ccattccgag gcatgtctga agaggaggtg ttcaccgagg
661 tggccaacct cttccggggc caggaggacc tgctctcaga gtttggacag ttcctgcccg
721 aagccaagcg gtctctgttc acaggaaacg ggccgtgcga gatgcacagc gtgcagaaga
781 acgagcacga caagaccccg gagcacagca ggaagcgctc ccggccctcg ctcctccgcc
841 ccgtgtctgc acccgccaag aaaaaaatga aacttcgtgg taccaaagac ctgtccatcg
901 ctgcagtggg gaagtacggg actctgcagg aattttcttt ctttgacaag gtccgccggg
961 tgctgaagag ccaggaggtg tatgaaaact tcctccgctg catcgcactc ttcaaccagg
1021 agctggtgtc tggctctgag ctcctgcagc tcgtcagccc atttctgggg tgagcagctg
1081 acttcccagg gctccctagg ggggttctgt tcctgtcaac tccatctact tggtttttag
1141 ttactgtttt tgagcaatga ttgtgctttt ctaaaatcct gtttattaat tgacgtgatt
1201 gatataatta ttgattccca tgcatttgta aggagcaata caccacctgg gtaccctcca
1261 gctggttcct ttaccagtaa catctgtagt cattatcctc accagaatac agtgggtcct
1321 cgagtaatgc cttttcattt aacactgttt taacaccgat gagaaaagaa gacattcatt
1381 tctggtctga gtggagtttg cacgttctcc ccatgtctgc gtggattttc tcccacatcc
1441 caaagatgtg catgttaggt taagtctagg ttaagcggtg agtctccgtg gtcccagcct
1501 gagtgagtgt ggcggggtga gcgccctgca gtggggtggc gtcctgtcca gggtgggtgc
1561 cccactggtg ctctgagctg ctgggatagg gtccggccac ccaagatcct gaactggaat
1621 aattgggtaa attgttattt tacttgtttt tactcatctt tcttatctgt atgtgtggct
1681 tgcatttatt tcagtgttta atattagaag tgttttggtc tctctttaga aatttggtga
1741 ttgttttgtg accaaaaata cgccgtagga acgtcattct tgtttatgtg tcaattagct
1801 tgtggcaaaa ttggttttgt tacacatctt ttcaacttaa agacacagct ttctaacacc
1861 tgttgatgat gttgagtgag gacttactgt actgactctc acacaacccc cgttctttcc
1921 agactctccg tgttcctcat acacgtctgg tgtgtgtgtt tttatacagc tttctcactg
1981 tggagggttg tgcgtccgcc acagtgaaga tactgaacgg ctccaggact gtcaagttct
2041 ggccttgacc ttttatctcc atcccaaaac cctgcctcag ccggagtctg ttccaaaccc
2101 ctggcaacta cttatctgtt ctctagacaa tgttacagta atggaactgt acaggaggaa
2161 ccctctggga gaaaccttcc cccccccccc ccagcaaaat tccctggaga ttcacctgat
2221 aaatactttt aaaaattcta acacttgggc cgggtgcggt ggctcgtgtg taatcccagc
2281 actttgggag gccggggtga gcagattgcc tgaggtcagg agttggagac aggcctggcc
2341 agcatggtgg aactccatct ctactggaaa tacaaaagtt agccgggcgt ggtggcaggc
2401 gcctgtaatc ccagctgctt gggaggctga ggcaggagaa tcgcttgagc ccaggaggcg
2461 gaggttgcag tgagctgaga tcgcgccatt gtactccagc ctgggtggcg acaagagcaa
2521 gactttgtct caaaaacaaa aaaaaaaaaa aa
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