LOCUS BC110798 1933 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens FERM and PDZ domain containing 2 like 1, mRNA (cDNA
clone IMAGE:5728287), complete cds.
ACCESSION BC110798
VERSION BC110798.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1933)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1933)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 255 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63252915
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1933
/db_xref="H-InvDB:HIT000339689"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5728287"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1933
/gene="FRMPD2L1"
/gene_synonym="yX59F3.2"
/db_xref="GeneID:728798"
/db_xref="HGNC:HGNC:16843"
CDS 144..1106
/gene="FRMPD2L1"
/gene_synonym="yX59F3.2"
/codon_start=1
/product="FERM and PDZ domain containing 2 like 1"
/protein_id="AAI10799.1"
/db_xref="GeneID:728798"
/db_xref="HGNC:HGNC:16843"
/translation="MTSIPFPGDRLLQVDGVILCGLTHKQAVQCLKGPGQVARLVLER
RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGF
SFVQMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVL
HLLRGAPQEVTLLLCRPPPGALPEMEQEWQTPELSADKEFTRATCTDSCTSPILDQED
SWRDSASPDAGEGLGLRPESSQKAIREAQWGQNRERPWASSLTHSPESHPHLCKLHQE
RDESTLATSLEKDVRQNCYSVCDIMRLGRYSFSSPLTRLSTDIF"
BASE COUNT 515 a 494 c 460 g 464 t
ORIGIN
1 cagagaggca ggattcctgc tgactccagg gggacacctg gcacctcagc ttcctttccc
61 acttctccag gctgcatgga ggggtgccgg gcaggggcct cctggaaggg aacctcctgc
121 agcctcaagc accaggtcat gacatgacat ctatcccttt cccaggtgac cgactcctgc
181 aggtggatgg agtgattctg tgcggcctca cccacaagca ggctgtgcag tgcctgaagg
241 gtcctgggca ggttgcaaga ctggtcttag agagaagagt ccccaggagt acacagcagt
301 gtccttctgc taatgacagc atgggagatg aacgcacggc tgtttccttg gtaacagcct
361 tgcctggcag gccttcgagc tgtgtctcgg tgacagatgg tcctaagttt gaagtcaaac
421 taaaaaagaa tgccaatggt ttgggattca gtttcgtgca gatggagaaa gagagctgca
481 gccatctcaa aagtgatctt gtgaggatta agaggctctt tccggggcag ccagctgagg
541 agaatggggc cattgcagct ggtgacatta tcctggccgt gaatggaagg tccacggaag
601 gcctcatctt ccaggaggtg ctgcatttac tgagaggggc cccacaggaa gtcacgctcc
661 tcctttgccg accccctcca ggtgcgctgc ctgagatgga gcaggaatgg cagacacctg
721 aactctcagc tgacaaagaa ttcaccaggg caacatgtac tgactcatgt accagcccca
781 tcctggatca agaggacagc tggagggaca gtgcctcccc agatgcaggg gaaggcctgg
841 gtctcaggcc agagtcttcc caaaaggcca tcagagaggc acaatggggc caaaacagag
901 agagaccttg ggccagttcc ttgacacatt ctcctgagtc ccaccctcat ttatgcaaac
961 ttcaccaaga aagggatgaa tcaacattgg cgacctcttt ggaaaaggat gtgaggcaaa
1021 actgctattc agtttgtgat atcatgagac ttggaagata ttccttctca tctcctctaa
1081 ccagactttc gacagatatt ttctgagcac cttctctgca tgtctgcagt gctgtgtaaa
1141 atgccctacc tttgcatgga ctattctttc taatcaagag gcgtgtgtgg cgaacttggg
1201 gcagcccctg gaagtcttgt tctttgacca ttacgtctgc ggctgcatca ccagataatg
1261 agcttcacca ctcgtctgcc tcctgtgtcc ttccgcgggg agtaaatgtc acttcagctt
1321 gccgcatctc taaataggca aattttcagt gctcagaaaa ggacctgatc tttgcacaaa
1381 gtgctttgat ggttgcctgc ttgagtcact cccaatccct tcctgaagcc ctttctttat
1441 aattcttctg ttgaaatagc catcatattc acagtactaa tcacagcatc tcacatttac
1501 taaaaactta ccccatacca ggaacccaga gttggggggg ctgtgtcaga attatgtaat
1561 ttacgtgtcc caataatcct agacgcttct tgaccatcta gttttgtcaa atgagaaaac
1621 tgaggttcca aagaagtcaa taaacttgtc caaagtctga ccgactctgc ttgccatgtg
1681 acgagtctgt cttagaactg ggtcattgcc ctgcttgcaa tgctgtgccc tctggcaagc
1741 ccccccaccc ccccggtctc ctgagctcgg taaggtgctc cagctgcttc tatcatagca
1801 cttcctacat ggactgtaac atttctttac tgctccaact tctcattaaa ttgggggctc
1861 ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaa
//