LOCUS BC110650 6379 bp mRNA linear HUM 07-AUG-2007
DEFINITION Homo sapiens ATG2 autophagy related 2 homolog A (S. cerevisiae),
mRNA (cDNA clone MGC:117153 IMAGE:6147561), complete cds.
ACCESSION BC110650
VERSION BC110650.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 6379)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 6379)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: e Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57634531.
FEATURES Location/Qualifiers
source 1..6379
/db_xref="H-InvDB:HIT000339673"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:117153 IMAGE:6147561"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..6379
/gene="ATG2A"
/db_xref="GeneID:23130"
/db_xref="HGNC:HGNC:29028"
CDS 116..5932
/gene="ATG2A"
/codon_start=1
/product="ATG2 autophagy related 2 homolog A (S.
cerevisiae)"
/protein_id="AAI10651.1"
/db_xref="GeneID:23130"
/db_xref="HGNC:HGNC:29028"
/translation="MSRWLWPWSNCVKERVCRYLLHHYLGHFFQEHLSLDQLSLDLYK
GSVALRDIHLEIWSVNEVLESMESPLELVEGFVGSIEVAVPWAALLTDHCTVRVSGLQ
LTLQPRRGPAPGAADSQSWASCMTTSLQLAQECLRDGLPEPSEPPQPLEGLEMFAQTI
ETVLRRIKVTFLDTVVRVEHSPGDGERGVAVEVRVQRLEYCDEAVRDPSQAPPVDVHQ
PPAFLHKLLQLAGVRLHYEELPAQEEPPEPPLQIGSCSGYMELMVKLKQNEAFPGPKL
EVAGQLGSLHLLLTPRQLQQLQELLSAVSLTDHEGLADKLNKSRPLGAEDLWLIEQDL
NQQLQAGAVAEPLSPDPLTNPLLNLDNTDLFFSMAGLTSSVASALSELSLSDVDLASS
VRSDMASRRLSAQAHPAGKMAPNPLLDTMRPDSLLKMTLGGVTLTLLQTSAPSSGPPD
LATHFFTEFDATKDGPFGSRDFHHLRPRFQRACPCSHVRLTGTAVQLSWELRTGSRGR
RTTSMEVHFGQLEVLECLWPRGTSEPEYTEILTFPGTLGSQASARPCAHLRHTQILRR
VPKSRPRRSVACHCHSELALDLANFQADVELGALDRLAALLRLATVPAEPPAGLLTEP
LPAMEQQTVFRLSAPRATLRLRFPIADLRPERDPWAGQAVRAEQLRLELSEPQFRSEL
SSGPGPPVPTHLELTCSDLHGIYEDGGKPPVPCLRVSKALDPKSTGRKYFLPQVVVTV
NPQSSSTQWEVAPEKGEELELSVESPCELREPEPSPFSSKRTMYETEEMVIPGDPEEM
RTFQSRTLALSRCSLEVILPSVHIFLPSKEVYESIYNRINNDLLMWEPADLLPTPDPA
AQPSGFPGPSGFWHDSFKMCKSAFKLANCFDLTPDSDSDDEDAHFFSVGASGGPQAAA
PEAPSLHLQSTFSTLVTVLKGRITALCETKDEGGKRLEAVHGELVLDMEHGTLFSVSQ
YCGQPGLGYFCLEAEKATLYHRAAVDDYPLPSHLDLPSFAPPAQLAPTIYPSEEGVTE
RGASGRKGQGRGPHMLSTAVRIHLDPHKNVKEFLVTLRLHKATLRHYMALPEQSWHSQ
LLEFLDVLDDPVLGYLPPTVITILHTHLFSCSVDYRPLYLPVRVLITAETFTLSSNII
MDTSTFLLRFILDDSALYLSDKCEVETLDLRRDYVCVLDVDLLELVIKTWKGSTEGKL
SQPLFELRCSNNVVHVHSCADSCALLVNLLQYVMSTGDLHPPPRPPSPTEIAGQKLSE
SPASLPSCPPVETALINQRDLADSLLDTERSLRELAQPSGGHLPQASPISVYLFPGER
SGAPPPSPPVGGPAGSLGSCSEEKEDEREEEGDGDTLDSDEFCILDAPGLGIPPRDGE
PVVTQLHPGPIVVRDGYFSRPIGSTDLLRAPAHFPVPSTRVVLREVSLVWHLYGGRDF
GPHPGHRARTGLSGPRSSPSRCSGPNRPQNSWRTQGGSGRQHHVLMEIQLSKVSFQHE
VYPAEPATGPAAPSQELEERPLSRQVFIVQELEVRDRLASSQINKFLYLHTSERMPRR
AHSNMLTIKALHVAPTTNLGGPECCLRVSLMPLRLNVDQDALFFLKDFFTSLVAGINP
VVPGETSAEARPETRAQPSSPLEGQAEGVETTGSQEAPGGGHSPSPPDQQPIYFREFR
FTSEVPIWLDYHGKHVTMDQVGTFAGLLIGLAQLNCSELKLKRLCCRHGLLGVDKVLG
YALNEWLQDIRKNQLPGLLGGVGPMHSVVQLFQGFRDLLWLPIEQYRKDGRLMRGLQR
GAASFGSSTASAALELSNRLVQAIQATAETVYDILSPAAPVSRSLQDKRSARRLRRGQ
QPADLREGVAKAYDTVREGILDTAQTICDVASRGHEQKGLTGAVGGVIRQLPPTVVKP
LILATEATSSLLGGMRNQIVPDAHKDHALKWRSDSAQD"
BASE COUNT 1155 a 2143 c 1924 g 1157 t
ORIGIN
1 gcctggcgcc tagagaagcg gcggggcgag ccgggggctc tagtgaacag cggagccgga
61 cggggatcgc cggcgggcgg caagcggagg cggcccaggc ccggcggtct ccgagatgtc
121 acgatggctg tggccatggt caaactgtgt gaaagagcgg gtctgccgct acttgctgca
181 tcactactta ggtcacttct tccaagagca cctcagcctg gaccagctca gcctcgatct
241 gtacaagggc agcgttgccc tgcgagacat ccacctggaa atctggtctg tgaacgaggt
301 gctggagtca atggagtcac cgctggagct ggtggaaggc ttcgtgggct ccatcgaggt
361 ggccgtgccc tgggctgctc tgctcaccga ccactgcaca gtgcgcgtgt ccggcctcca
421 gctcaccttg cagccccgcc ggggtccagc gccaggggct gccgactcac agagctgggc
481 ctcatgcatg accacaagcc tgcagctggc ccaggagtgt ctgcgggatg ggctaccgga
541 gccctctgag ccaccacagc ccctggaggg gctggagatg tttgcccaga ccattgagac
601 tgtgcttcgg aggatcaaag tgaccttcct ggacactgtc gtgagggtgg agcactctcc
661 gggtgatggg gaacgtggtg tggccgtcga ggtccgtgtg cagagactgg agtactgtga
721 tgaggcagtg cgggacccaa gccaggcgcc gccggtggat gtgcatcagc cgcctgcctt
781 cctgcacaag ctgctgcagc tggcaggggt ccgcctgcac tacgaggagc tcccggcaca
841 ggaagagcct ccagagcccc ccttgcagat cggcagctgc tcagggtaca tggagctgat
901 ggtgaagttg aagcaaaatg aggccttccc tggccccaag ttggaggtgg cgggacagct
961 gggctccctg cacctgctcc tgaccccgag gcagctccag caacttcagg aactgctcag
1021 cgccgtgagc cttacagacc acgagggcct ggctgacaag ctgaacaaga gccgcccgct
1081 aggtgccgaa gacctgtggc tgattgagca ggacctgaac cagcagctgc aggcaggggc
1141 agtggctgag cccctcagcc cagaccccct taccaacccc cttctcaacc tggataacac
1201 tgacctcttc ttctccatgg ctggcctcac aagcagtgtg gcctcagccc tctctgagct
1261 ctccctctcc gatgtagacc tggcctcctc tgtgcgcagc gacatggcct cccgccggct
1321 ctctgcccag gcccacccag ctggcaagat ggcccccaac cccctcctgg acaccatgcg
1381 ccctgactcg ctgctgaaga tgaccttggg gggtgtgacc ctgaccttgc ttcagacgtc
1441 tgccccatct tccggaccac ctgacctcgc cacgcacttt ttcaccgagt ttgatgccac
1501 caaggatggg cccttcggtt cccgagactt ccatcacctt cgaccacgct tccagagggc
1561 ctgtccctgt agccatgttc ggctaacggg cacagccgtg cagctgtcct gggagctgcg
1621 gacgggcagt cggggccggc ggacaaccag catggaagtg cacttcgggc agctggaggt
1681 gctggagtgt ctgtggcccc ggggcacctc tgagcctgag tacacggaga tcctgacctt
1741 tcctggtacg ctgggctccc aggcctcagc tcggccctgc gcccatctgc gccacacaca
1801 gatcctgcgc cgtgtgccta agagccgacc ccggcgctca gttgcctgcc attgccactc
1861 agaactggcc ctggacctgg ccaacttcca ggcggacgtg gagctggggg ccctggaccg
1921 gctggccgcc ctactgcgcc tggccaccgt acctgctgag cctccagccg gcctgctgac
1981 agagcccctg ccggcgatgg agcagcagac ggtatttcgg ctctctgcac cccgggccac
2041 gctgcggctg cgcttcccca ttgccgacct gcggcctgag cgggacccct gggcgggcca
2101 ggccgtgcgg gctgagcagc ttcggctgga gctgagtgag ccccagttcc ggtcagagct
2161 tagcagtggg cctggtcccc cagtccccac ccacctggaa ctcacctgct ccgacctaca
2221 tggtatctat gaagatggag ggaagccacc tgtcccttgc ctgcgtgtct ccaaagccct
2281 ggaccccaag agcactgggc gcaagtactt cctgccccag gtagtggtga ctgtgaaccc
2341 ccagtccagc agcacacagt gggaggtggc cccggagaag ggagaggaac tggagctgtc
2401 agtggagagt ccctgtgagc tgcgggaacc tgagccctcg cccttctcct ctaagaggac
2461 catgtatgag acagaggaga tggtgatccc tggagaccct gaggagatga ggacgttcca
2521 gagccggacc ctggcactgt cccgctgcag cctggaagtg atcctgccca gtgtccacat
2581 ctttctgccc agcaaggagg tctacgagag catctacaac aggatcaaca acgacctgct
2641 catgtgggag cctgcagatc tgcttcccac ccccgacccc gccgcccagc cctcgggctt
2701 ccccggcccc tcaggcttct ggcacgacag ctttaagatg tgcaagtcag ccttcaagct
2761 ggccaactgc tttgatctca ccccagactc ggactcggat gacgaggatg cccacttctt
2821 ctcagtgggg gcatcaggtg gcccacaggc cgctgcccct gaggccccaa gtcttcactt
2881 gcagagcacc ttctctacac tggtgacagt gctgaagggg cggatcacag ccctctgtga
2941 gaccaaggat gagggtggga agcggctgga ggctgtgcac ggggagctgg tgctggacat
3001 ggagcacggt accctcttca gcgtctccca gtactgtggc cagccaggac ttggctactt
3061 ctgtctggaa gctgaaaagg caacactcta ccaccgagcg gccgtggatg actacccgct
3121 gcccagtcac ctggaccttc ccagtttcgc tcccccggct cagctggccc caaccatcta
3181 cccatcggag gaaggggtga ccgagcgggg agcctcgggc cgcaagggcc agggccgggg
3241 accccacatg ttgtccactg ctgtgcgcat ccacctggac ccccacaaga atgtgaagga
3301 gttcctggtg acactgcggt tgcacaaagc caccttgcgc cactacatgg ccctgcccga
3361 gcagagctgg cattcccagt tgttggagtt cctagacgtg ctggatgacc ctgtgctggg
3421 ctacctgccc ccgacggtca tcaccatcct gcacacacac ctgttctcct gctctgtgga
3481 ctataggcca ctctacctcc cagtgcgtgt cctcatcacc gcggagacct tcactctctc
3541 cagcaacatc atcatggaca cctccacctt cctgctcagg ttcatcctcg atgactccgc
3601 cttgtacctg tccgacaagt gtgaggtgga gaccctggac ctgcggcgag attatgtctg
3661 tgttttggat gttgacctct tggaacttgt gattaaaacc tggaaaggga gcaccgaggg
3721 caaactgagc cagccactat tcgagctgcg ctgctccaac aatgtggtac acgtgcacag
3781 ctgtgccgac tcctgtgccc tgctggtcaa cctgctccag tacgtaatga gcacaggcga
3841 tctgcacccc ccaccccggc cccccagccc cacggagatc gccggccaga agctctcgga
3901 gagtcctgcc tctctgccct cgtgcccccc agtggagacg gccctcatca accagcgtga
3961 cctggccgac tccctcctgg acaccgagcg cagcctacgg gagctggccc agccttcagg
4021 tggccacctc cctcaggcgt cgcccatctc cgtctaccta ttcccaggtg aacggagtgg
4081 ggccccaccc ccttcaccac ctgtcggggg ccctgctggc agcttagggt catgctcaga
4141 ggagaaggaa gatgaaaggg aagaggaggg cgatggagac accctggaca gtgatgagtt
4201 ctgcatcctt gatgctcccg gcctgggcat cccgccccga gatggggagc ctgtggtgac
4261 acagctgcat cccggcccca tcgttgtgag ggacggttac ttctcacggc cgatcggcag
4321 cacggacttg ctgcgggcac ctgcccattt cccagtgccc agcactcggg tggtgctacg
4381 tgaggtctcc ctcgtctggc acctctatgg gggccgagac tttggccccc accccggcca
4441 cagggcaaga actggcctct caggtcccag gagctcccct tcccgctgct ctggccccaa
4501 ccggccccag aactcatggc gcacgcaggg gggcagcggg cggcagcacc atgtcctcat
4561 ggagatccag ctgagcaagg taagcttcca gcacgaggtg tacccagcgg agccagccac
4621 aggccctgcg gcccccagcc aggagctgga ggagcgaccg ctgtcccgtc aggtgttcat
4681 cgtgcaggag ctggaggtcc gagaccggct cgcctcctcc cagatcaaca agttcctgta
4741 cctacacacg agtgagcgga tgccgcgacg tgcccactct aacatgctca ccatcaaagc
4801 gctgcatgtg gcccccacta ccaacctggg tgggcctgag tgctgtctcc gcgtctcgct
4861 gatgcccctg cggctcaatg tggaccagga tgccctcttc ttcctcaagg acttcttcac
4921 tagtctggtg gccggcatca accccgtggt cccaggggag acctccgctg aggctcgccc
4981 cgagactcga gcccagccca gcagccccct ggaagggcag gccgaaggcg tagagaccac
5041 tggttcgcag gaggccccag gaggtggaca cagcccctcc cctcctgacc agcagcccat
5101 ctacttcaga gagttccgct tcacgtctga ggtccccatc tggctggatt accatggcaa
5161 gcacgtcacg atggaccagg tgggcacttt tgctggcctc ctcatcggcc tggcccaact
5221 caactgctcc gagctgaagc taaagcggct ctgttgcagg cacgggctcc tgggtgtgga
5281 caaggtgctg ggctatgccc tcaacgagtg gctgcaggac atccgcaaga accagctgcc
5341 cggcctgctg ggaggcgtgg gccccatgca ctcggttgtc cagctcttcc aagggttccg
5401 ggacctgctg tggctgccca ttgagcagta caggaaggat ggccgcctca tgcgggggct
5461 gcagcgaggg gctgcctcct ttggctcatc cacagcctct gccgccctgg aactcagcaa
5521 ccggttggta caggctatcc aggccacagc tgagaccgtg tatgacatcc tgtccccggc
5581 agcccccgtc tcccgctccc tgcaggataa gcgctctgcg cggaggctgc gcaggggcca
5641 gcagcctgcc gacctgcggg agggtgtggc caaggcctac gacacagtgc gagagggcat
5701 cttggataca gctcagacca tctgtgacgt ggcatcgcgg ggccatgagc agaaggggct
5761 gacgggcgcc gtggggggcg tgatccgcca gctgcccccg actgtggtga agccgctcat
5821 cctggccacg gaggccacgt ccagcctgct cgggggcatg cgcaaccaga ttgtccccga
5881 cgcccacaag gaccacgccc tcaagtggcg ctcggacagt gcccaagact gagcctgggg
5941 tgcccggcac ccagagggtg ctgcccacca tgctcctgag cctcccaaga gctgcagccc
6001 acgggcccgg cccggcctgg cccttcaggg gatggccact gtgaaggacg ccttcccagc
6061 ctgcccgttg ccaatctgct gtgagagggg ggcctccctg ccttggggcc ttagccctgg
6121 ctctgcactt ttcctccggg gagaaaggac actgcccctc ccccgacctg ggcccacact
6181 gctgccttct cccaggacgg aggcttttgg accctcggac cccatcccac tcagccaagt
6241 gtctttctgt gtctgggggg aggaggggat gatatccgtg tggttcgatg tattattttt
6301 aagctccgtg agtgcgtggg tcagtgtctg catgaagtgg aataaactgc ccaccgccaa
6361 aaaaaaaaaa aaaaaaaaa
//