LOCUS BC110509 4420 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens tet oncogene family member 2, mRNA (cDNA clone
IMAGE:40029091), partial cds.
ACCESSION BC110509
VERSION BC110509.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4420)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4420)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: l Column: 17.
FEATURES Location/Qualifiers
source 1..4420
/db_xref="H-InvDB:HIT000386575"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40029091"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CTCTCC sequenced from
the forward primer"
gene <1..4420
/gene="TET2"
/db_xref="GeneID:54790"
/db_xref="HGNC:HGNC:25941"
CDS <1..2420
/gene="TET2"
/codon_start=3
/product="TET2 protein"
/protein_id="AAI10510.1"
/db_xref="GeneID:54790"
/db_xref="HGNC:HGNC:25941"
/translation="WVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGIPLSLA
DKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYNGCK
FARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPE
CRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQL
HVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPVKTCRQRKLEAKK
AAAEKLSSLENSSNKNEKEKSAPSRTKQTENASQAKQLAELLRLSGPVMQQSQQPQPL
QKQPPQPQQQQRPQQQQPHHPQTESVNSYSASGSTNPYMRRPNPVSPYPNSSHTSDIY
GSTSPMNFYSTSSQAAGSYLNSSNPMNPYPGLLNQNTQYPSYQCNGNLSVDNCSPYLG
SYSPQSQPMDLYRYPSQDPLSKLSLPPIHTLYQPRFGNSQSFTSKYLGYGNQNMQGDG
FSSCTIRPNVHHVGKLPPYPTHEMDGHFMGATSRLPPNLSNPNMDYKNGEHHSPSHVI
HNYSAAPGMFNSSLHALHLQNKENDMLSHTANGLSKMLPALNHDRTACVQGGLHKLSD
ANGQEKQPLALVQGVASGAEDNDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRE
LHATTPLKNPNRNHPTRISLVFYQHKSMNEPKHGLALWEAKMAEKAREKEEECEKYGP
DYVPQKSHGKKVKREPAEPHETSEPTYLRFIKSLAERTMSVTTDSTVTTSPYAFTRVT
GPYNRYI"
BASE COUNT 1366 a 939 c 896 g 1219 t
ORIGIN
1 agtgggtggt tcgcagaagc agcagtgaag agaagctact gtgtttggtg cgggagcgag
61 ctggccacac ctgtgaggct gcagtgattg tgattctcat cctggtgtgg gaaggaatcc
121 cgctgtctct ggctgacaaa ctctactcgg agcttaccga gacgctgagg aaatacggca
181 cgctcaccaa tcgccggtgt gccttgaatg aagagagaac ttgcgcctgt caggggctgg
241 atccagaaac ctgtggtgcc tccttctctt ttggttgttc atggagcatg tactacaatg
301 gatgtaagtt tgccagaagc aagatcccaa ggaagtttaa gctgcttggg gatgacccaa
361 aagaggaaga gaaactggag tctcatttgc aaaacctgtc cactcttatg gcaccaacat
421 ataagaaact tgcacctgat gcatataata atcagattga atatgaacac agagcaccag
481 agtgccgtct gggtctgaag gaaggccgtc cattctcagg ggtcactgca tgtttggact
541 tctgtgctca tgcccacaga gacttgcaca acatgcagaa tggcagcaca ttggtatgca
601 ctctcactag agaagacaat cgagaatttg gaggaaaacc tgaggatgag cagcttcacg
661 ttctgccttt atacaaagtc tctgacgtgg atgagtttgg gagtgtggaa gctcaggagg
721 agaaaaaacg gagtggtgcc attcaggtac tgagttcttt tcggcgaaaa gtcaggatgt
781 tagcagagcc agtcaagact tgccgacaaa ggaaactaga agccaagaaa gctgcagctg
841 aaaagctttc ctccctggag aacagctcaa ataaaaatga aaaggaaaag tcagccccat
901 cacgtacaaa acaaactgaa aacgcaagcc aggctaaaca gttggcagaa cttttgcgac
961 tttcaggacc agtcatgcag cagtcccagc agccccagcc tctacagaag cagccaccac
1021 agccccagca gcagcagaga ccccagcagc agcagccaca tcaccctcag acagagtctg
1081 tcaactctta ttctgcttct ggatccacca atccatacat gagacggccc aatccagtta
1141 gtccttatcc aaactcttca cacacttcag atatctatgg aagcaccagc cctatgaact
1201 tctattccac ctcatctcaa gctgcaggtt catatttgaa ttcttctaat cccatgaacc
1261 cttaccctgg gcttttgaat cagaataccc aatatccatc atatcaatgc aatggaaacc
1321 tatcagtgga caactgctcc ccatatctgg gttcctattc tccccagtct cagccgatgg
1381 atctgtatag gtatccaagc caagaccctc tgtctaagct cagtctacca cccatccata
1441 cactttacca gccaaggttt ggaaatagcc agagttttac atctaaatac ttaggttatg
1501 gaaaccaaaa tatgcaggga gatggtttca gcagttgtac cattagacca aatgtacatc
1561 atgtagggaa attgcctcct tatcccactc atgagatgga tggccacttc atgggagcca
1621 cctctagatt accacccaat ctgagcaatc caaacatgga ctataaaaat ggtgaacatc
1681 attcaccttc tcacgtaatc cataactaca gtgcagctcc gggcatgttc aacagctctc
1741 ttcatgccct gcatctccaa aacaaggaga atgacatgct ttcccacaca gctaatgggt
1801 tatcaaagat gcttccagct cttaaccatg atagaactgc ttgtgtccaa ggaggcttac
1861 acaaattaag tgatgctaat ggtcaggaaa agcagccatt ggcactagtc cagggtgtgg
1921 cttctggtgc agaggacaac gatgaggtct ggtcagacag cgagcagagc tttctggatc
1981 ctgacattgg gggagtggcc gtggctccaa ctcatgggtc aattctcatt gagtgtgcaa
2041 agcgtgagct gcatgccaca acccctttaa agaatcccaa taggaatcac cccaccagga
2101 tctccctcgt cttttaccag cataagagca tgaatgagcc aaaacatggc ttggctcttt
2161 gggaagccaa aatggctgaa aaagcccgtg agaaagagga agagtgtgaa aagtatggcc
2221 cagactatgt gcctcagaaa tcccatggca aaaaagtgaa acgggagcct gctgagccac
2281 atgaaacttc agagcccact tacctgcgtt tcatcaagtc tcttgccgaa aggaccatgt
2341 ccgtgaccac agactccaca gtaactacat ctccatatgc cttcactcgg gtcacagggc
2401 cttacaacag atatatatga tatcaccccc ttttgttggt tacctcactt gaaaagacca
2461 caaccaacct gtcagtagta tagttctcat gacgtgggca gtggggaaag gtcacagtat
2521 tcatgacaaa tgtggtggga aaaacctcag ctcaccagca acaaaagagg ttatcttacc
2581 atagcactta attttcactg gctcccaagt ggtcacagat ggcatctagg aaaagaccaa
2641 agcattctat gcaaaaagaa ggtggggaag aaagtgttcc gcaatttaca tttttaaaca
2701 ctggttctat tattggacga gatgatatgt aaatgtgatc cccccccccg cttacaactc
2761 tacacatctg tgaccacttt taataatatc aagtttgcat agtcatggaa cacaaatcaa
2821 acaagtactg tagtattaca gtgacaggaa tcttaaaata ccatctggtg ctgaatatat
2881 gatgtactga aatactggaa ttatggcttt ttgaaatgca gtttttactg taatcttaac
2941 ttttatttat caaaatagct acaggaaaca tgaatagcag gaaaacactg aatttgtttg
3001 gatgttctaa gaaatggtgc taagaaaatg gtgtctttaa tagctaaaaa tttaatgcct
3061 ttatatcatc aagatgctat cagtgtactc cagtgccctt gaataatagg ggtacctttt
3121 cattcaagtt tttatcataa ttacctattc ttacacaagc ttagttttta aaatgtggac
3181 attttaaagg cctctggatt ttgctcatcc agtgaagtcc ttgtaggaca ataaacgtat
3241 atatgtacat atatacacaa acatgtatat gtgcacacac atgtatatgt ataaatattt
3301 taaatggtgt tttagaagca ctttgtctac ctaagctttg acaacttgaa caatgctaag
3361 gtactgagat gtttaaaaaa caagtttact ttcattttag aatgcaaagt tgattttttt
3421 aaggaaacaa agaaagcttt taaaatattt ttgcttttag ccatgcatct gctgatgagc
3481 aattgtgtcc atttttaaca cagccagtta aatccaccat ggggcttact ggattcaagg
3541 gaatacgtta gtccacaaaa catgttttct ggtgctcatc tcacatgcta tactgtaaaa
3601 cagttttata caaaattgta tgacaagttc attgctcaaa aatgtacagt tttaagaatt
3661 ttctattaac tgcaggtaat aattagctgc atgctgcaga ctcaacaaag ctagttcact
3721 gaagcctatg ctattttatg gatcataggc tcttcagaga actgaatggc agtctgcctt
3781 tgtgttgata attatgtaca ttgtgacgtt gtcatttctt agcttaagtg tcctctttaa
3841 caagaggatt gagcagactg atgcctgcat aagatgaata aacagggtta gttccatgtg
3901 aatctgtcag ttaaaaagaa acaaaaacag gcagctggtt tgctgtggtg gttttaaatc
3961 attaatttgt ataaagaagt gaaagagttg tatagtaaat taaattgtaa acaaaacttt
4021 tttaatgcaa tgctttagta ttttagtact gtaaaaaaat taaatatata catatatata
4081 tatatatata tatatatata tatgagtttg aagcagaatt cacatcatga tggtgctact
4141 cagcctgcta caaatatatc ataatgtgag ctaagaattc attaaatgtt tgagtgatgt
4201 tcctacttgt catatacctc aacactagtt tggcaatagg atattgatct gagagtgaaa
4261 gcattgtgta ccatcatttt tttccaagtc ctttttttta ttgttaaaaa aaaaagcata
4321 ccttttttca atacttgatt tcttagcaag tataacttga acttcaacct ttttgttcta
4381 aaaattcagg gatatttcag ctcatgctct ccctatgcca
//