LOCUS BC110505 3016 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens hexokinase domain containing 1, mRNA (cDNA clone
IMAGE:40028728), complete cds.
ACCESSION BC110505
VERSION BC110505.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3016)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3016)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC110505.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: k Column: 24
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3016
/db_xref="H-InvDB:HIT000339572"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40028728"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: NA"
gene 1..3016
/gene="HKDC1"
/db_xref="GeneID:80201"
/db_xref="HGNC:HGNC:23302"
CDS 133..2886
/gene="HKDC1"
/codon_start=1
/product="hexokinase domain containing 1"
/protein_id="AAI10506.2"
/db_xref="GeneID:80201"
/db_xref="HGNC:HGNC:23302"
/translation="MFAVHLMAFYFSKLKEDQIKKVDRFLYHMRLSDDTLLDIMRRFR
AEMEKGLAKDTNPTAAVKMLPTFVRAIPDGSENGEFLSLDLGGSKFRVLKVQVAEEGK
RHVQMESQFYPTPNEIIRGNGTELFEYVADCLADFMKTKDLKHKKLPLGLTFSFPCRQ
TKLEEGVLLSWTKKFKARGVQDTDVVSRLTKAMRRHKDMDVDILALVNDTVGTMMTCA
YDDPYCEVGVIIGTGTNACYMEDMSNIDLVEGDEGRMCINTEWGAFGDDGALEDIRTE
FDRELDLGSLNPGKQLFEKMISGLYLGELVRLILLKMAKAGLLFGGEKSSALHTKGKI
ETRHVAAMEKYKEGLANTREILVDLGLEPSEADCIAVQHVCTIVSFRSANLCAAALAA
ILTRLRENKKVERLRTTVGMDGTLYKIHPQYPKRLHKVVRKLVPSCDVRFLLSESGST
KGAAMVTAVASRVQAQRKQIDRVLALFQLTREQLVDVQAKMRAELEYGLKKKSHGLAT
VRMLPTYVCGLPDGTEKGKFLALDLGGTNFRVLLVKIRSGRRSVRMYNKIFAIPLEIM
QGTGEELFDHIVQCIADFLDYMGLKGASLPLGFTFSFPCRQMSIDKGTLIGWTKGFKA
TDCEGEDVVDMLREAIKRRNEFDLDIVAVVNDTVGTMMTCGYEDPNCEIGLIAGTGSN
MCYMEDMRNIEMVEGGEGKMCINTEWGGFGDNGCIDDIRTRYDTEVDEGSLNPGKQRY
EKMTSGMYLGEIVRQILIDLTKQGLLFRGQISERLRTRGIFETKFLSQIESDRLALLQ
VRRILQQLGLDSTCEDSIVVKEVCGAVSRRAAQLCGAGLAAIVEKRREDQGLEHLRIT
VGVDGTLYKLHPHFSRILQETVKELAPRCDVTFMLSEDGSGKGAALITAVAKRLQQAQ
KEN"
BASE COUNT 737 a 744 c 934 g 601 t
ORIGIN
1 tttagtccgc aacacctcgc tccccaggag gtctgccagc ctggactgga agcgtgcaac
61 actccagagt cgtaggagtg aacactgcac aggaatctct gcccatctca ggagaaacca
121 aacttgggga aaatgtttgc ggtccacttg atggcatttt acttcagcaa gctgaaggag
181 gaccagatca agaaggtgga caggttcctg tatcacatgc ggctctccga tgacaccctt
241 ttggacatca tgaggcggtt ccgggctgag atggagaagg gcctggcaaa ggacaccaac
301 cccacggctg cagtgaagat gttgcccacc ttcgtcaggg ccattcccga tggttccgaa
361 aatggggagt tcctttccct ggatctcgga gggtccaagt tccgagtgct gaaggtgcaa
421 gtcgctgaag aggggaagcg acacgtgcag atggagagtc agttctaccc aacgcccaat
481 gaaatcatcc gcgggaacgg cacagagctg tttgaatatg tagctgactg tctggcagat
541 ttcatgaaga ccaaagattt aaagcataag aaattgcccc ttggcctaac tttttctttc
601 ccctgtcgac agactaaact ggaagagggt gtcctacttt cgtggacaaa aaagtttaag
661 gcacgaggag ttcaggacac ggatgtggtg agccgtctga ccaaagccat gagaagacac
721 aaggacatgg acgtggacat cctggccctg gtcaatgaca ccgtggggac catgatgacc
781 tgtgcctatg acgaccccta ctgcgaagtt ggtgtcatca tcggaactgg caccaatgcg
841 tgttacatgg aggacatgag caacattgac ctggtggagg gcgacgaggg caggatgtgc
901 atcaacacag agtggggggc cttcggggac gacggggccc tggaggacat tcgcactgag
961 ttcgacaggg agctggacct cggctctctc aacccaggaa agcaactgtt cgagaagatg
1021 atcagtggcc tgtacctggg ggagcttgtc aggcttatct tgctgaagat ggccaaggct
1081 ggcctcctgt ttggtggtga gaaatcttct gctctccaca ctaagggcaa gatcgaaaca
1141 cggcacgtgg ctgccatgga gaagtataaa gaaggccttg ctaatacaag agagatcctg
1201 gtggacctgg gtctggaacc gtctgaggct gactgcattg ccgtccagca tgtctgtacc
1261 atcgtctcct tccgctcggc caatctctgt gcagcagctc tggcggccat cctgacacgc
1321 ctccgggaga acaagaaggt ggaacggctc cggaccacag tgggcatgga cggcaccctc
1381 tacaagatac accctcagta cccaaaacgc ctgcacaagg tggtgaggaa actggtccca
1441 agctgtgatg tccgcttcct cctgtcagag agtggcagca ccaagggggc cgccatggtg
1501 accgcggtgg cctcccgcgt gcaggcccag cggaagcaga tcgacagggt gctggctttg
1561 ttccagctga cccgagagca gctcgtggac gtgcaggcca agatgcgggc tgagctggag
1621 tatgggctga agaagaagag ccacgggctg gccacggtca ggatgctgcc cacctacgtc
1681 tgcgggctgc cggacggcac agagaaagga aagtttctcg ccctggatct tgggggaacc
1741 aacttccggg tcctcctggt gaagatcaga agtggacgga ggtcagtgcg aatgtacaac
1801 aagatcttcg ccatccccct ggagatcatg cagggcactg gtgaggagct ctttgatcac
1861 attgtgcagt gcatcgccga cttcctggac tacatgggcc tcaagggagc ctccctacct
1921 ttgggcttca cattttcatt tccctgcagg cagatgagca ttgacaaggg aacactcata
1981 gggtggacca aaggtttcaa ggccactgac tgtgaagggg aggacgtggt ggacatgctc
2041 agggaagcca tcaagaggag aaacgagttt gacctggaca ttgttgcagt cgtgaatgat
2101 acagtgggga ccatgatgac ctgtggctat gaagatccta attgtgagat tggcctgatt
2161 gcaggaacag gcagcaacat gtgctacatg gaggacatga ggaacatcga gatggtggag
2221 gggggtgaag ggaagatgtg catcaataca gagtggggag gatttggaga caatggctgc
2281 atagatgaca tccggacccg atacgacacg gaggtggatg aggggtcctt gaatcctggc
2341 aagcagagat acgagaaaat gaccagtggg atgtacttgg gggagattgt gcggcagatc
2401 ctgatcgacc tgaccaagca gggtctcctc ttccgagggc agatttcaga gcgtctccgg
2461 accaggggca tcttcgaaac caagttcctg tcccagatcg aaagcgatcg gctggccctt
2521 ctccaggtca ggaggattct gcagcagctg ggcctggaca gcacgtgtga ggacagcatc
2581 gtggtgaagg aggtgtgcgg agccgtgtcc cggcgggcgg cccagctctg cggtgctggc
2641 ctggccgcta tagtggaaaa aaggagagaa gaccaggggc tagagcacct gaggatcact
2701 gtgggtgtgg acggcaccct gtacaagctg caccctcact tttctagaat attgcaggaa
2761 actgtgaagg aactagcccc tcgatgtgat gtgacattca tgctgtcaga agatggcagt
2821 ggaaaagggg cagcactgat cactgctgtg gccaagaggt tacagcaggc acagaaggag
2881 aactaggaac ccctgggatt ggacctgatg catcttggat actgaacagc ttttcctctg
2941 gcagatcagt tggtcagaga ccaatgggca ccctcctggc tgacctcacc ttctggatgg
3001 ccgaaagaga acccca
//