LOCUS BC110365 1904 bp mRNA linear HTC 18-MAR-2009
DEFINITION Homo sapiens family with sequence similarity 86, member A
pseudogene, mRNA (cDNA clone IMAGE:5393226), with apparent retained
intron.
ACCESSION BC110365
VERSION BC110365.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1904)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1904)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 233 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922578
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1904
/db_xref="H-InvDB:HIT000339523"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5393226"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 512 a 541 c 451 g 400 t
ORIGIN
1 cgctgcggcc ccgcccacgt catggcgccc gaggagaacg cggggaccga actcttgctg
61 cagagtttgg agcgccgctt cctggcggcg cgtgcactgc gctccttacc cttgcagagc
121 ttagaagcaa agttaagaga ctcatcagat tctgagctgc tgcgggatat tttgcagaag
181 acgtgctgta ttgcccagaa gccatcgtgt cgctggtcgg ggtcctgcgg aggctggctg
241 cctgccggga gcaccagcgg gctcctcaag tctatgtggc ccttaccgtc tgcaacccag
301 agatgtgcca gctgttcacc accgagctat gccgggctgg gatcagatgg gaagtggaac
361 ctcgtcatga ccagaaactg tttccctacg aagagcactt ggagatggca atgctgaacc
421 tcacactgta ggactcacat acgactccaa cgggattgtg agaatcaagt cactctcgtg
481 ggaagagttt ttatatggga aagcggataa aactttcatt ggactggaat gtttggagaa
541 tgttaatttc caaatcagga accacaaact gccctctaat aagacatcgg ctatctaagc
601 atgtgggtgc tccctttctg ccagcaattc tggttcttaa gaaaatcacc atcaatcaga
661 catgaaatct ctggctccaa aaatagcatt ttctttgtgc aaataaaaac gtgtgtatca
721 agtatgatgt tcccccaatg tggacacact cggttcccca caaagccaag cccgctgcag
781 ctgccacatc cctggacaca tttggttcct cacaaagcca agcccgctgc agctgccaca
841 tccgtggaca cactcggttc ttcacaaagc caagcccact gcagctgcca catccctggg
901 cttacagtgc agcaggtgct tttttcaaga caggaatcaa aatgttagga acacggcgga
961 aagatgacac ctggagagca aacgcaggat gaggagtact gcagaggtca cacggaagtc
1021 gcagaacagt aatccgctag caggggcatg gggcgtgaag aacagaagaa gataggaagt
1081 gtttccgagc ctccagaaaa gaaatcagag ccaagcacag cttcccgggt cacagaacca
1141 attcatttac caggcggcac cactgccgtc atttcacctt ctggccactg ggaggcgctg
1201 ctcgaaaggg tttgccctga gactccgaga agaagctgcg ggaaggacag caggggtccc
1261 ggggttttag cctctggccc aggagttatg tgtccataac caaatggagc acactctgca
1321 cccatctctc atcccatcgg agctgctgcg attcccgcag gttcttccgg aactggttta
1381 gcttgcccgc aggatcagga aagtttgaga aaagcatctg caaaaaaata aagagcagag
1441 cttaactcat ttcctgtccc caccccatcc caggtcacca cctggctgac cccaggtccc
1501 cgacccaaca acaaaccctc ccaagttcct aactccctca cttggactcg agactcttca
1561 cgccccagca gcgctccgcc tccaacttga catcacgctt tctgtcccac tttcccacac
1621 ttcgtgccct ggagcacctc ccggcctcta cacgctgtat gttcccctgc gagcaccctc
1681 ctcttggcct ctggccaagt cccacccatc tgtgggtaac aagggggtgt tggtgttctt
1741 ttcagccttg ctaaactgtc tgaatcaagg atcacaaact acagcctgca ggccaaatcc
1801 agcccacagc ctgtgtttgt aaataaagtt ttattggaac aaagccacac cccttaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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