LOCUS BC109278 2757 bp mRNA linear HUM 12-JAN-2007 DEFINITION Homo sapiens lin-54 homolog (C. elegans), mRNA (cDNA clone MGC:129905 IMAGE:40028371), complete cds. ACCESSION BC109278 VERSION BC109278.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2757) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2757) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 26, 2006 this sequence version replaced BC109278.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 13 Row: k Column: 8. FEATURES Location/Qualifiers source 1..2757 /db_xref="H-InvDB:HIT000339375" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:129905 IMAGE:40028371" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: CGACCC sequenced from the forward primer" gene 1..2757 /gene="LIN54" /gene_synonym="CXCDC1" /gene_synonym="DKFZp686L1814" /gene_synonym="JC8.6" /gene_synonym="MIP120" /db_xref="GeneID:132660" /db_xref="HGNC:HGNC:25397" CDS 259..2241 /gene="LIN54" /gene_synonym="CXCDC1" /gene_synonym="DKFZp686L1814" /gene_synonym="JC8.6" /gene_synonym="MIP120" /codon_start=1 /product="LIN54 protein" /protein_id="AAI09279.1" /db_xref="GeneID:132660" /db_xref="HGNC:HGNC:25397" /translation="MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETEL EEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTITKADSNTTVKPAFPSGLQKL GAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQ LPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSV LQTQQLKTVQAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVT ATSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPINPT SQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQL QQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDC FANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSK GCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQ TAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGK SKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC" BASE COUNT 871 a 608 c 585 g 693 t ORIGIN 1 cctgacatac cagaggcggc ggcgacggcg acgtcgccac cccggctccc ttctcggtcc 61 ccgggtaccc tggagcgctc cagtttggac aaactgggaa aggaagctgc tggccagagc 121 tatcgtgcac gggcaaaaca agccccgccg gggctcggga ttgcccagga ccttctggag 181 cccctacctc ggagcccgag ggaggagaaa gcggcagccg ctggagtgcc tgatcaactt 241 tctagcggga gaacgatcat ggaggtggtg ccagctgagg tgaatagttt gcttccagag 301 gaaataatgg acactggtat aactttagtg gatgatgata gtattgaggc tgttattgtt 361 tcatccccaa ttcccatgga gacagaactg gaagaaattg tcaacataaa ttctactggt 421 gactctacag ccacgcccat ttccacggaa ccaatcacag tgtacagtaa ccacactaac 481 caagttgcag tgaataccac aattactaaa gcagattcta ataccacagt gaaaccagct 541 tttccaagtg gccttcaaaa acttggtgct cagactcctg tgactatatc agccaatcag 601 attattttaa acaaagtatc acagacatct gatcttaaac ttggcaatca gacccttaaa 661 ccagatggac agaagttaat tttaacaact ttgggcaagt ctggttcacc aattgtttta 721 gcactacccc atagccaact accccaggct cagaaagtta caactcaggc ccagtcagga 781 gatgctaagt taccaccgca gcaaattaaa gtagttacca ttggagggag gccagaggtg 841 aaacctgtca ttggtgtctc agcattgacc ccaggaagtc aactgattaa tactacaact 901 cagccctctg tgttacagac ccaacagtta aaaacagtac aggcagtgaa atcaactgtg 961 cagaccatca ctgttggagg agtgagcaca tcacagttta agacaattat tcctctggca 1021 actgctccca atgtccagca gattcaagtg cctggaagca agtttcatta tgtccgactt 1081 gttactgcca catcagccag tagctcaacc cagccagtta gtcagaatcc cagtacaaac 1141 actcagcctc ttcagcaagc aaagccagtg gttgttaata caaccccagt gcggatgtca 1201 gttccaattg tctcagctca ggctgtcaaa caagttgttc caaaaccaat caatccaact 1261 tcacaaatag taactactag ccagccacag caacggctta tcatgcctgc cacaccactg 1321 ccacagatcc agcccaacct cactaacctg ccaccaggca ctgtcctggc accagctccg 1381 ggaacaggga atgtgggtta tgcagtgctt ccagctcagt atgttactca gctacagcag 1441 tcttcatatg tatcaatagc aagcaactct acctttactg gaacatctgg tatccagacc 1501 caggcacggc ttccattcaa tggcataatc ccatcagagt cggccagtcg gccccgaaag 1561 ccctgtaatt gtacaaaatc actgtgtttg aaattgtatt gtgattgctt tgcaaatggt 1621 gaattttgca acaactgcaa ttgtactaat tgttacaaca atttggaaca tgaaaatgaa 1681 aggcaaaaag caataaaggc atgccttgac agaaatccag aagcctttaa gcctaagata 1741 gggaaaggaa aggagggaga atctgatcga cgtcatagca aagggtgtaa ttgcaaacga 1801 tcaggatgtc ttaaaaacta ctgtgaatgc tatgaggcaa aaataatgtg ttcctcaata 1861 tgcaaatgta ttggctgtaa gaattttgaa gaaagcccgg aaaggaagac attgatgcat 1921 ttggcagatg cagctgaagt aagggtacag caacaaacag cagccaagac gaagttatcc 1981 tctcaaattt cagacttgct tactaggcca acaccagctt taaatagtgg aggcggaaaa 2041 ttgccattta catttgtaac taaggaagta gctgaagcca catgtaattg cctccttgcc 2101 caggcagagc aggcagacaa gaagggaaaa tcaaaggcag cagcggaacg gatgatactt 2161 gaggaattcg gacgatgttt gatgagtgtc atcaactctg caggaaaggc aaaaagtgac 2221 ccttgtgcca tgaattgcta actcttgcac aaaagactga taaatggaac tgtacagaaa 2281 atttaaggtg cagggacact tgattttctg gaagaaaaac aattactgta ttttaattca 2341 gtccttgttt taaaagacct gaaattataa tactgaagga gaagaaattt taaatgagga 2401 aattagtaca ttttaaatct tagttaaatc tgcttatgtc ccttctaaat tgaatttttc 2461 tttattatat agatttttta atttgcttgg gtttcttaag aattagatgt tctctttctg 2521 atacctttga caaaaaatgt ttataaattc atataattta taatgtatgg tgttgtatga 2581 ctttgttaat agaaaagcca aagcagcagt ggttagcacc cattctttgg gacttgatct 2641 agaatatctg cagacagaat gttacataaa caaattctta tgaaacacat tcaaatgaca 2701 ttttgtattt agaaaaggac tatcttttaa agaaaaagca gccttttagg gccgatt //