LOCUS BC109277 2684 bp mRNA linear HUM 12-JAN-2007
DEFINITION Homo sapiens lin-54 homolog (C. elegans), mRNA (cDNA clone
IMAGE:40028369), complete cds.
ACCESSION BC109277
VERSION BC109277.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2684)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2684)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 26, 2006 this sequence version replaced BC109277.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: k Column: 7
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2684
/db_xref="H-InvDB:HIT000339374"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40028369"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CGAATC sequenced from
the reverse primer"
gene 1..2684
/gene="LIN54"
/gene_synonym="CXCDC1"
/gene_synonym="DKFZp686L1814"
/gene_synonym="JC8.6"
/gene_synonym="MIP120"
/db_xref="GeneID:132660"
/db_xref="HGNC:HGNC:25397"
CDS 260..991
/gene="LIN54"
/gene_synonym="CXCDC1"
/gene_synonym="DKFZp686L1814"
/gene_synonym="JC8.6"
/gene_synonym="MIP120"
/codon_start=1
/product="LIN54 protein"
/protein_id="AAI09278.1"
/db_xref="GeneID:132660"
/db_xref="HGNC:HGNC:25397"
/translation="MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETEL
EEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTITKADSNTTVKPAFPSGLQKL
GAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQ
LPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSV
LQTQQLKTVQVGFFHSLLPELHQRP"
BASE COUNT 860 a 583 c 562 g 679 t
ORIGIN
1 ccctgacata ccagaggcgg cggcgacggc gacgtcgcca ccccggctcc cttctcggtc
61 cccgggtacc ctggagcgct ccagtttgga caaactggga aaggaagctg ctggccagag
121 ctatcgtgca cgggcaaaac aagccccgcc ggggctcggg attgcccagg accttctgga
181 gcccctacct cggagcccga gggaggagaa agcggcagcc gctggagtgc ctgatcaact
241 ttctagcggg agaacgatca tggaggtggt gccagctgag gtgaatagtt tgcttccaga
301 ggaaataatg gacactggta taactttagt ggatgatgat agtattgagg ctgttattgt
361 ttcatcccca attcccatgg agacagaact ggaagaaatt gtcaacataa attctactgg
421 tgactctaca gccacgccca tttccacgga accaatcaca gtgtacagta accacactaa
481 ccaagttgca gtgaatacca caattactaa agcagattct aataccacag tgaaaccagc
541 ttttccaagt ggccttcaaa aacttggtgc tcagactcct gtgactatat cagccaatca
601 gattatttta aacaaagtat cacagacatc tgatcttaaa cttggcaatc agacccttaa
661 accagatgga cagaagttaa ttttaacaac tttgggcaag tctggttcac caattgtttt
721 agcactaccc catagccaac taccccaggc tcagaaagtt acaactcagg cccagtcagg
781 agatgctaag ttaccaccgc agcaaattaa agtagttacc attggaggga ggccagaggt
841 gaaacctgtc attggtgtct cagcattgac cccaggaagt caactgatta atactacaac
901 tcagccctct gtgttacaga cccaacagtt aaaaacagta caggtagggt tctttcacag
961 tctactcccg gaactccatc aaagaccata acaatatctg aaagtggtgt tattggatca
1021 actttaaatt ctacaacaca gacaccaaat aaaatagcca tctcaccttt gaaatcgcca
1081 aataagcaaa gccagtggtt gttaatacaa ccccagtgcg gatgtcagtt ccaattgtct
1141 cagctcaggc tgtcaaacaa gttgttccaa aaccaatcaa tccaacttca caaatagtaa
1201 ctactagcca gccacagcaa cggcttatca tgcctgccac accactgcca cagatccagc
1261 ccaacctcac taacctgcca ccaggcactg tcctggcacc agctccggga acagggaatg
1321 tgggttatgc agtgcttcca gctcagtatg ttactcagct acagcagtct tcatatgtat
1381 caatagcaag caactctacc tttactggaa catctggtat ccagacccag gcacggcttc
1441 cattcaatgg cataatccca tcagagtcgg ccagtcggcc ccgaaagccc tgtaattgta
1501 caaaatcact gtgtttgaaa ttgtattgtg attgctttgc aaatggtgaa ttttgcaaca
1561 actgcaattg tactaattgt tacaacaatt tggaacatga aaatgaaagg caaaaagcaa
1621 taaaggcatg ccttgacaga aatccagaag cctttaagcc taagataggg aaaggaaagg
1681 agggagaatc tgatcgacgt catagcaaag ggtgtaattg caaacgatca ggatgtctta
1741 aaaactactg tgaatgctat gaggcaaaaa taatgtgttc ctcaatatgc aaatgtattg
1801 gctgtaagaa ttttgaagaa agcccggaaa ggaagacatt gatgcatttg gcagatgcag
1861 ctgaagtaag ggtacagcaa caaacagcag ccaagacgaa gttatcctct caaatttcag
1921 acttgcttac taggccaaca ccagctttaa atagtggagg cggaaaattg ccatttacat
1981 ttgtaactaa ggaagtagct gaagccacat gtaattgcct ccttgcccag gcagagcagg
2041 cagacaagaa gggaaaatca aaggcagcag cggaacggat gatacttgag gaattcggac
2101 gatgtttgat gagtgtcatc aactctgcag gaaaggcaaa aagtgaccct tgtgccatga
2161 attgctaact cttgcacaaa agactgataa atggaactgt acagaaaatt taaggtgcag
2221 ggacacttga ttttctggaa gaaaaacaat tactgtattt taattcagtc cttgttttaa
2281 aagacctgaa attataatac tgaaggagaa gaaattttaa atgaggaaat tagtacattt
2341 taaatcttag ttaaatctgc ttatgtccct tctaaattga atttttcttt attatataga
2401 ttttttaatt tgcttgggtt tcttaagaat tagatgttct ctttctgata cctttgacaa
2461 aaaatgttta taaattcata taatttataa tgtatggtgt tgtatgactt tgttaataga
2521 aaagccaaag cagcagtggt tagcacccat tctttgggac ttgatctaga atatctgcag
2581 acagaatgtt acataaacaa attcttatga aacacattca aatgacattt tgtatttaga
2641 aaaggactat cttttaaaga aaaagcagcc ttttagggcc gatt
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