LOCUS BC109246 1792 bp mRNA linear HUM 06-MAR-2007
DEFINITION Homo sapiens platelet-derived growth factor alpha polypeptide, mRNA
(cDNA clone IMAGE:40019131), complete cds.
ACCESSION BC109246
VERSION BC109246.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1792)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1792)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: b Column: 17
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1792
/db_xref="H-InvDB:HIT000339345"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40019131"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: NA"
gene 1..1792
/gene="PDGFA"
/gene_synonym="PDGF-A"
/gene_synonym="PDGF1"
/db_xref="GeneID:5154"
/db_xref="HGNC:HGNC:8799"
/db_xref="MIM:173430"
CDS 822..1526
/gene="PDGFA"
/gene_synonym="PDGF-A"
/gene_synonym="PDGF1"
/codon_start=1
/product="platelet-derived growth factor alpha
polypeptide"
/protein_id="AAI09247.1"
/db_xref="GeneID:5154"
/db_xref="HGNC:HGNC:8799"
/db_xref="MIM:173430"
/translation="MPCISGKPWWESRFSWRAPNGGSCEGLCRQVPVPQWLPKLVCGK
CGWTGPGHSARAWGIHGVLLPPAGSEDSLDTSLRAHGVHATKHVPEKRPLPIRRKRSI
EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVH
HRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACATTSLNPDYREEDTGEWLPSSASVL
ENRSSEPCFWGVRWPP"
BASE COUNT 308 a 537 c 595 g 352 t
ORIGIN
1 atgctgtctt cctggcaagg aggcccagag ccacccgcgg tgcccaggtg cgggcagtgt
61 ccatgggcag gactgtgggt cctctcccta ctgcgggatt tggagagacc tgagactccc
121 ccagcctgtc tgctgtagcc gtcagcgcct gtgaaggggt ggtgtgtgca gctgggtggg
181 gtggcgggga taggttctca gttctgctcc ccggtcagtg ctggtcttgg ctctgggcca
241 ctgccccacc tgcacctggc cgcctggctg taaacacggc tcgcagatgc cagcttctct
301 caacccctct ccgcaggccg cctccctctg tcaggctgcg ggaactcctc cgtgtagcct
361 ccacgagagg ccacgtgccc tcctgcctct cctcatggcc gctggcccta gagtagactc
421 atttcaggaa tgagtggggt ctggcccgca gcccagtctg gcggcttcca gtgcccctca
481 gaggttaggc cacttcttcc aggagtgctt tagtgagggg gagggaggga gacgtacagg
541 cacctgcaga aatctcagcg gcctctgctt ctccctcgct ccagccccca gacagaggtg
601 gggcctggct tagccctgtg cccctcgggg aggtgcacgg agctgggcgg cctcaggccc
661 ctcctgcccc ggggcagccc tcacctgggc taccttggag gaggcaccgt aggggagacc
721 acctgcaacc tcttccccga agggccctgc gcttcgtcac gggcccctga atgtggggac
781 ctctgtgcta acggggcgtt ttctgcggtt tccagtgttt catgccctgc atctctggaa
841 agccctggtg ggaatcgagg ttctcctgga gggcccctaa tggcgggagc tgtgaggggc
901 tgtgccgcca ggtgcctgtt ccccagtggc tcccaaagct ggtctgtggg aagtgcggct
961 ggacaggccc agggcacagc gcacgggcct ggggcattca cggtgttctc cttccgcctg
1021 cagggagtga ggattctttg gacaccagcc tgagagctca cggggtccat gccactaagc
1081 atgtgcccga gaagcggccc ctgcccattc ggaggaagag aagcatcgag gaagctgtcc
1141 ccgctgtctg caagaccagg acggtcattt acgagattcc tcggagtcag gtcgacccca
1201 cgtccgccaa cttcctgatc tggcccccgt gcgtggaggt gaaacgctgc accggctgct
1261 gcaacacgag cagtgtcaag tgccagccct cccgcgtcca ccaccgcagc gtcaaggtgg
1321 ccaaggtgga atacgtcagg aagaagccaa aattaaaaga agtccaggtg aggttagagg
1381 agcatttgga gtgcgcctgc gcgaccacaa gcctgaatcc ggattatcgg gaagaggaca
1441 cgggtgagtg gctgccttcg tcggcatcgg tgttggagaa caggtcttca gagccttgct
1501 tttggggtgt taggtggccc ccttgagcgc aacgcttact gctgtgagca tctgggctgc
1561 tgttgaagga ttcgttgccc tgctcccggg ccagatgcct gcgggggaga cggatcccac
1621 acctgcaggt gtccggtggg gagggtggcc caagctgcgg cactggcagg agaggaggtt
1681 caggtctcac tgagaggggc tgggagtgca taagacaccc aattcattag tgggctgcgg
1741 ggctgagctg agaagaatct gcagaagggc ctccttgcca ggaagacagc at
//