LOCUS BC109240 807 bp mRNA linear HUM 23-JUL-2007 DEFINITION Homo sapiens protocadherin gamma subfamily A, 6, mRNA (cDNA clone IMAGE:40015230), partial cds. ACCESSION BC109240 VERSION BC109240.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 807) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 807) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 8 Row: o Column: 10. FEATURES Location/Qualifiers source 1..807 /db_xref="H-InvDB:HIT000386507" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:40015230" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TGAACAAA sequenced from the forward primer" gene <1..>807 /gene="PCDHGA6" /gene_synonym="PCDH-GAMMA-A6" /db_xref="GeneID:56109" /db_xref="HGNC:HGNC:8704" /db_xref="MIM:606293" CDS <1..>807 /gene="PCDHGA6" /gene_synonym="PCDH-GAMMA-A6" /codon_start=2 /product="PCDHGA6 protein" /protein_id="AAI09241.1" /db_xref="GeneID:56109" /db_xref="HGNC:HGNC:8704" /db_xref="MIM:606293" /translation="HTLTGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSANLDYED SSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALF QVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDK GTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNA QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWETAHL" BASE COUNT 219 a 212 c 178 g 198 t ORIGIN 1 gcacacactg acaggagtcc acggggaagt aacttattcc tttgtgaaga ttacagaaaa 61 gatctcacaa attttctgtt tgaatgtttt gactggagaa atttcaactt ctgcaaatct 121 agactatgag gactcgagtt tttatgagct gggtgttgaa gcccgggatg ggccaggtct 181 tcgagacaga gcgaaagtct taataactat cttggatgtc aatgataatg taccagaagt 241 ggttgttaca tctggaagca gaacaattgc tgaaagtgca cctccaggaa cagtaatcgc 301 cctttttcaa gtgttcgatc gagactctgg cctgaatggc ctggtaacct gttccatccc 361 gagaagtctc ccatttgaat tggaaaaatc agttggcaat tattatcgat tagtgacaaa 421 tgcagctcta gaccgggaag aggtattctt gtacaacatc actgtgacag ccacggacaa 481 aggaacacca cctctgtcta cagaaacaat catctctcta aatgtggcag acaccaacga 541 caacccgccc accttccccc attcatccta ctcagtctat gtccttgaaa acaaccccag 601 gggtgcctcc atcttctctg tgaatgcact ggaccctgac gtggaccaga acgcccaagt 661 ctcctactca ctggcagaag acaccctcca gggggcgccc ctgtcctcct acgtgtccat 721 caactccgac actgggattc tgtacgccct gcgctccttc gactatgagc agttgagaga 781 cctacagctg tgggagacag cccacct //