LOCUS BC109103 2721 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
domain (TM) and short cytoplasmic domain, (semaphorin) 4C, mRNA
(cDNA clone MGC:126382 IMAGE:40035252), complete cds.
ACCESSION BC109103
VERSION BC109103.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2721)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2721)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 14 Row: l Column: 23.
FEATURES Location/Qualifiers
source 1..2721
/db_xref="H-InvDB:HIT000339272"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126382 IMAGE:40035252"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: TTCTCAA sequenced from
the reverse primer"
gene 1..2721
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
CDS 90..2591
/gene="SEMA4C"
/gene_synonym="FLJ20369"
/gene_synonym="KIAA1739"
/gene_synonym="M-Sema F"
/gene_synonym="M-SEMA-F"
/gene_synonym="Semacl1"
/gene_synonym="Semaf"
/codon_start=1
/product="sema domain, immunoglobulin domain (Ig),
transmembrane domain (TM) and short cytoplasmic domain,
(semaphorin) 4C"
/protein_id="AAI09104.1"
/db_xref="GeneID:54910"
/db_xref="HGNC:HGNC:10731"
/db_xref="MIM:604462"
/translation="MAPHWAVWLLAARLWGLGIGAEVWWNLVPRKTVSSGELATVVRR
FSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWEAPVEKKTECIQK
GKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHGEFEDGKGKCP
YDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWLNEPHFVGS
AYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGARTLQRKWT
TFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQL
EEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILN
FVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK
AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCAD
CVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNIT
VVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGA
YHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLL
VLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSD
GSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGED
RGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV"
BASE COUNT 506 a 840 c 854 g 521 t
ORIGIN
1 gtcagagccg aacgcgaggg cggcgcccgg ggactggagc tgcgcgcaat aggacagctg
61 gcctgaagct cagagccggg gcgtgcgcca tggccccaca ctgggctgtc tggctgctgg
121 cagcaaggct gtggggcctg ggcattgggg ctgaggtgtg gtggaacctt gtgccgcgta
181 agacagtgtc ttctggggag ctggccacgg tagtacggcg gttctcccag accggcatcc
241 aggacttcct gacactgacg ctgacggagc ccactgggct tctgtacgtg ggcgcccgag
301 aggccctgtt tgccttcagc atggaggccc tggagctgca aggagcgatc tcctgggagg
361 cccccgtgga gaagaagact gagtgtatcc agaaagggaa gaacaaccag accgagtgct
421 tcaacttcat ccgcttcctg cagccctaca atgcctccca cctgtacgtc tgtggcacct
481 acgccttcca gcccaagtgc acctacgtca acatgctcac cttcactttg gagcatggag
541 agtttgaaga tgggaagggc aagtgtccct atgacccagc taagggccat gctggccttc
601 ttgtggatgg tgagctgtac tcggccacac tcaacaactt cctgggcacg gaacccatta
661 tcctgcgtaa catggggccc caccactcca tgaagacaga gtacctggcc ttttggctca
721 acgaacctca ctttgtaggc tctgcctatg tacctgagag tgtgggcagc ttcacggggg
781 acgacgacaa ggtctacttc ttcttcaggg agcgggcagt ggagtccgac tgctatgccg
841 agcaggtggt ggctcgtgtg gcccgtgtct gcaagggcga tatggggggc gcacggaccc
901 tgcagaggaa gtggaccacg ttcctgaagg cgcggctggc atgctctgcc ccgaactggc
961 agctctactt caaccagctg caggcgatgc acaccctgca ggacacctcc tggcacaaca
1021 ccaccttctt tggggttttt caagcacagt ggggtgacat gtacctgtcg gccatctgtg
1081 agtaccagtt ggaagagatc cagcgggtgt ttgagggccc ctataaggag taccatgagg
1141 aagcccagaa gtgggaccgc tacactgacc ctgtacccag ccctcggcct ggctcgtgca
1201 ttaacaactg gcatcggcgc cacggctaca ccagctccct ggagctaccc gacaacatcc
1261 tcaacttcgt caagaagcac ccgctgatgg aggagcaggt ggggcctcgg tggagccgcc
1321 ccctgctcgt gaagaagggc accaacttca cccacctggt ggccgaccgg gttacaggac
1381 ttgatggagc cacctataca gtgctgttca ttggcacagg agacggctgg ctgctcaagg
1441 ctgtgagcct ggggccctgg gttcacctga ttgaggagct gcagctgttt gaccaggagc
1501 ccatgagaag cctggtgcta tctcagagca agaagctgct ctttgccggc tcccgctctc
1561 agctggtgca gctgcccgtg gccgactgca tgaagtatcg ctcctgtgca gactgtgtcc
1621 tcgcccggga cccctattgc gcctggagcg tcaacaccag ccgctgtgtg gccgtgggtg
1681 gccactctgg atctctactg atccagcatg tgatgacctc ggacacttca ggcatctgca
1741 acctccgtgg cagtaagaaa gtcaggccca ctcccaaaaa catcacggtg gtggcgggca
1801 cagacctggt gctaccctgc cacctctcct ccaacttggc ccatgcccgc tggacctttg
1861 ggggccggga cctgcctgcg gaacagcccg ggtccttcct ctacgatgcc cggctccagg
1921 ccctggttgt gatggctgcc cagccccgcc atgccggggc ctaccactgc ttttcagagg
1981 agcagggggc gcggctggct gctgaaggct accttgtggc tgtcgtggca ggcccgtcgg
2041 tgaccttgga ggcccgggcc cccctggaaa acctggggct ggtgtggctg gcggtggtgg
2101 ccctgggggc tgtgtgcctg gtgctgctgc tgctggtgct gtcattgcgc cggcggctgc
2161 gggaagagct ggagaaaggg gccaaggcta ctgagaggac cttggtgtac cccctggagc
2221 tgcccaagga gcccaccagt ccccccttcc ggccctgtcc tgaaccagat gagaaacttt
2281 gggatcctgt cggttactac tattcagatg gctcccttaa gatagtacct gggcatgccc
2341 ggtgccagcc cggtgggggg cccccttcgc cacctccagg catcccaggc cagcctctgc
2401 cttctccaac tcggcttcac ctggggggtg ggcggaactc aaatgccaat ggttacgtgc
2461 gcttacaact aggaggggag gaccggggag ggctcgggca ccccctgcct gagctcgcgg
2521 atgaactgag acgcaaactg cagcaacgcc agccactgcc cgactccaac cccgaggagt
2581 catcagtatg aggggaaccc ccaccgcgtc ggcgggaagc gtgggaggtg tagctcctac
2641 ttttgcacag gcaccagcta cctcagggac atggcacggg cacctgctct gtctgggaca
2701 gatactgccc agcacccacc g
//