LOCUS BC109028 2709 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens ring finger protein 43, mRNA (cDNA clone MGC:125630
IMAGE:40027722), complete cds.
ACCESSION BC109028
VERSION BC109028.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 26, 2006 this sequence version replaced BC109028.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: j Column: 3.
FEATURES Location/Qualifiers
source 1..2709
/db_xref="H-InvDB:HIT000339197"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:125630 IMAGE:40027722"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GACTCA sequenced from
the reverse primer"
gene 1..2709
/gene="RNF43"
/gene_synonym="FLJ20315"
/gene_synonym="RNF124"
/gene_synonym="URCC"
/db_xref="GeneID:54894"
/db_xref="HGNC:HGNC:18505"
CDS 198..2549
/gene="RNF43"
/gene_synonym="FLJ20315"
/gene_synonym="RNF124"
/gene_synonym="URCC"
/codon_start=1
/product="ring finger protein 43"
/protein_id="AAI09029.1"
/db_xref="GeneID:54894"
/db_xref="HGNC:HGNC:18505"
/translation="MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQ
KAIIRVIPLKMDPTGKLNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPG
FISIVKLESPRRAPRPCLSLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWP
VVLIWGNDAEKLMEFVYKNQKAHVRIELKEPPAWPDYDVWILMTVVGTIFVIILASVL
RIRCRPRHSRPDPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICL
EEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQE
PGRRLHLIRQHPGHAHYHLPAAYLLGPSRSAVARPPRPGPFLPSQEPGMGPRHHRFPR
AAHPRAPGEQQRLAGAQHPYAQGWGLSHLQSTSQHPAACPVPLRRARPPDSSGSGESY
CTERSGYLADGPASDSSSGPCHGSSSDSVVNCTDISLQGVHGSSSTFCSSLSSDFDPL
VYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTGETQVSSHVHYHRHRHHHYKKRFQWHG
RKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTRSNSAAPSGRLSNPQCPRALPEPAP
GPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGPSEPTPGSRPQDATVHPACQIFP
HYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYSNSQPVWLCLTPRQPLEPHPP
GEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCEQAV"
BASE COUNT 570 a 849 c 746 g 544 t
ORIGIN
1 tctctgccca atcaggaatg ctacctgttt ttgggaataa actttagaga aaggaagggc
61 caaaactacg acttggcttt ctgaaacgga agcataaatg ttcttttcct ccatttgtct
121 ggatctgaga acctgcattt ggtattagct agtggaagca gtatgtatgg ttgaagtgca
181 ttgctgcagc tggtagcatg agtggtggcc accagctgca gctggctgcc ctctggccct
241 ggctgctgat ggctaccctg caggcaggct ttggacgcac aggactggta ctggcagcag
301 cggtggagtc tgaaagatca gcagaacaga aagctattat cagagtgatc cccttgaaaa
361 tggaccccac aggaaaactg aatctcactt tggaaggtgt gtttgctggt gttgctgaaa
421 taactccagc agaaggaaaa ttaatgcagt cccacccgct gtacctgtgc aatgccagtg
481 atgacgacaa tctggagcct ggattcatca gcatcgtcaa gctggagagt cctcgacggg
541 ccccccgccc ctgcctgtca ctggctagca aggctcggat ggcgggtgag cgaggagcca
601 gtgctgtcct ctttgacatc actgaggatc gagctgctgc tgagcagctg cagcagccgc
661 tggggctgac ctggccagtg gtgttgatct ggggtaatga cgctgagaag ctgatggagt
721 ttgtgtacaa gaaccaaaag gcccatgtga ggattgagct gaaggagccc ccggcctggc
781 cagattatga tgtgtggatc ctaatgacag tggtgggcac catctttgtg atcatcctgg
841 cttcggtgct gcgcatccgg tgccgccccc gccacagcag gccggatccg cttcagcaga
901 gaacagcctg ggccatcagc cagctggcca ccaggaggta ccaggccagc tgcaggcagg
961 cccggggtga gtggccagac tcagggagca gctgcagctc agcccctgtg tgtgccatct
1021 gtctggagga gttctctgag gggcaggagc tacgggtcat ttcctgcctc catgagttcc
1081 atcgtaactg tgtggacccc tggttacatc agcatcggac ttgccccctc tgcatgttca
1141 acatcacaga gggagattca ttttcccagt ccctgggacc ctctcgatct taccaagaac
1201 caggtcgaag actccacctc attcgccagc atcccggcca tgcccactac cacctccctg
1261 ctgcctacct gttgggccct tcccggagtg cagtggctcg gcccccacga cctggtccct
1321 tcctgccatc ccaggagcca ggcatgggcc ctcggcatca ccgcttcccc agagctgcac
1381 atccccgggc tccaggagag cagcagcgcc tggcaggagc ccagcacccc tatgcacaag
1441 gctggggact gagccacctc caatccacct cacagcaccc tgctgcttgc ccagtgcccc
1501 tacgccgggc caggccccct gacagcagtg gatctggaga aagctattgc acagaacgca
1561 gtgggtacct ggcagatggg ccagccagtg actccagctc agggccctgt catggctctt
1621 ccagtgactc tgtggtcaac tgcacggaca tcagcctaca gggggtccat ggcagcagtt
1681 ctactttctg cagctcccta agcagtgact ttgaccccct agtgtactgc agccctaaag
1741 gggatcccca gcgagtggac atgcagccta gtgtgacctc tcggcctcgt tccttggact
1801 cggtggtgcc cacaggggaa acccaggttt ccagccatgt ccactaccac cgccaccggc
1861 accaccacta caaaaagcgg ttccagtggc atggcaggaa gcctggccca gaaaccggag
1921 tcccccagtc caggcctcct attcctcgga cacagcccca gccagagcca ccttctcctg
1981 atcagcaagt caccagatcc aactcagcag ccccttcggg gcggctctct aacccacagt
2041 gccccagggc cctccctgag ccagcccctg gcccagttga cgcctccagc atctgcccca
2101 gtaccagcag tctgttcaac ttgcaaaaat ccagcctctc tgcccgacac ccacagagga
2161 aaaggcgggg gggtccctcc gagcccaccc ctggctctcg gccccaggat gcaactgtgc
2221 acccagcttg ccagattttt ccccattaca cccccagtgt ggcatatcct tggtccccag
2281 aggcacaccc cttgatctgt ggacctccag gcctggacaa gaggctgcta ccagaaaccc
2341 caggcccctg ttactcaaat tcacagccag tgtggttgtg cctgactcct cgccagcccc
2401 tggaaccaca tccacctggg gaggggcctt ctgaatggag ttctgacacc gcagagggca
2461 ggccatgccc ttatccgcac tgccaggtgc tgtcggccca gcctggctca gaggaggaac
2521 tcgaggagct gtgtgaacag gctgtgtgag atgttcaggc ctagctccaa ccaagagtgt
2581 gctccagatg tgtttgggcc ctacctggca cagagtcctg ctcctgggaa aggaaaggac
2641 cacagcaaac accattcttt ttgccgtact tcctagaagc actggaagag gactggtgat
2701 ggtggaggg
//