LOCUS BC109028 2709 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens ring finger protein 43, mRNA (cDNA clone MGC:125630 IMAGE:40027722), complete cds. ACCESSION BC109028 VERSION BC109028.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2709) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2709) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 26, 2006 this sequence version replaced BC109028.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 13 Row: j Column: 3. FEATURES Location/Qualifiers source 1..2709 /db_xref="H-InvDB:HIT000339197" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:125630 IMAGE:40027722" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: GACTCA sequenced from the reverse primer" gene 1..2709 /gene="RNF43" /gene_synonym="FLJ20315" /gene_synonym="RNF124" /gene_synonym="URCC" /db_xref="GeneID:54894" /db_xref="HGNC:HGNC:18505" CDS 198..2549 /gene="RNF43" /gene_synonym="FLJ20315" /gene_synonym="RNF124" /gene_synonym="URCC" /codon_start=1 /product="ring finger protein 43" /protein_id="AAI09029.1" /db_xref="GeneID:54894" /db_xref="HGNC:HGNC:18505" /translation="MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQ KAIIRVIPLKMDPTGKLNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPG FISIVKLESPRRAPRPCLSLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWP VVLIWGNDAEKLMEFVYKNQKAHVRIELKEPPAWPDYDVWILMTVVGTIFVIILASVL RIRCRPRHSRPDPLQQRTAWAISQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICL EEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQSLGPSRSYQE PGRRLHLIRQHPGHAHYHLPAAYLLGPSRSAVARPPRPGPFLPSQEPGMGPRHHRFPR AAHPRAPGEQQRLAGAQHPYAQGWGLSHLQSTSQHPAACPVPLRRARPPDSSGSGESY CTERSGYLADGPASDSSSGPCHGSSSDSVVNCTDISLQGVHGSSSTFCSSLSSDFDPL VYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTGETQVSSHVHYHRHRHHHYKKRFQWHG RKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTRSNSAAPSGRLSNPQCPRALPEPAP GPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGPSEPTPGSRPQDATVHPACQIFP HYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYSNSQPVWLCLTPRQPLEPHPP GEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCEQAV" BASE COUNT 570 a 849 c 746 g 544 t ORIGIN 1 tctctgccca atcaggaatg ctacctgttt ttgggaataa actttagaga aaggaagggc 61 caaaactacg acttggcttt ctgaaacgga agcataaatg ttcttttcct ccatttgtct 121 ggatctgaga acctgcattt ggtattagct agtggaagca gtatgtatgg ttgaagtgca 181 ttgctgcagc tggtagcatg agtggtggcc accagctgca gctggctgcc ctctggccct 241 ggctgctgat ggctaccctg caggcaggct ttggacgcac aggactggta ctggcagcag 301 cggtggagtc tgaaagatca gcagaacaga aagctattat cagagtgatc cccttgaaaa 361 tggaccccac aggaaaactg aatctcactt tggaaggtgt gtttgctggt gttgctgaaa 421 taactccagc agaaggaaaa ttaatgcagt cccacccgct gtacctgtgc aatgccagtg 481 atgacgacaa tctggagcct ggattcatca gcatcgtcaa gctggagagt cctcgacggg 541 ccccccgccc ctgcctgtca ctggctagca aggctcggat ggcgggtgag cgaggagcca 601 gtgctgtcct ctttgacatc actgaggatc gagctgctgc tgagcagctg cagcagccgc 661 tggggctgac ctggccagtg gtgttgatct ggggtaatga cgctgagaag ctgatggagt 721 ttgtgtacaa gaaccaaaag gcccatgtga ggattgagct gaaggagccc ccggcctggc 781 cagattatga tgtgtggatc ctaatgacag tggtgggcac catctttgtg atcatcctgg 841 cttcggtgct gcgcatccgg tgccgccccc gccacagcag gccggatccg cttcagcaga 901 gaacagcctg ggccatcagc cagctggcca ccaggaggta ccaggccagc tgcaggcagg 961 cccggggtga gtggccagac tcagggagca gctgcagctc agcccctgtg tgtgccatct 1021 gtctggagga gttctctgag gggcaggagc tacgggtcat ttcctgcctc catgagttcc 1081 atcgtaactg tgtggacccc tggttacatc agcatcggac ttgccccctc tgcatgttca 1141 acatcacaga gggagattca ttttcccagt ccctgggacc ctctcgatct taccaagaac 1201 caggtcgaag actccacctc attcgccagc atcccggcca tgcccactac cacctccctg 1261 ctgcctacct gttgggccct tcccggagtg cagtggctcg gcccccacga cctggtccct 1321 tcctgccatc ccaggagcca ggcatgggcc ctcggcatca ccgcttcccc agagctgcac 1381 atccccgggc tccaggagag cagcagcgcc tggcaggagc ccagcacccc tatgcacaag 1441 gctggggact gagccacctc caatccacct cacagcaccc tgctgcttgc ccagtgcccc 1501 tacgccgggc caggccccct gacagcagtg gatctggaga aagctattgc acagaacgca 1561 gtgggtacct ggcagatggg ccagccagtg actccagctc agggccctgt catggctctt 1621 ccagtgactc tgtggtcaac tgcacggaca tcagcctaca gggggtccat ggcagcagtt 1681 ctactttctg cagctcccta agcagtgact ttgaccccct agtgtactgc agccctaaag 1741 gggatcccca gcgagtggac atgcagccta gtgtgacctc tcggcctcgt tccttggact 1801 cggtggtgcc cacaggggaa acccaggttt ccagccatgt ccactaccac cgccaccggc 1861 accaccacta caaaaagcgg ttccagtggc atggcaggaa gcctggccca gaaaccggag 1921 tcccccagtc caggcctcct attcctcgga cacagcccca gccagagcca ccttctcctg 1981 atcagcaagt caccagatcc aactcagcag ccccttcggg gcggctctct aacccacagt 2041 gccccagggc cctccctgag ccagcccctg gcccagttga cgcctccagc atctgcccca 2101 gtaccagcag tctgttcaac ttgcaaaaat ccagcctctc tgcccgacac ccacagagga 2161 aaaggcgggg gggtccctcc gagcccaccc ctggctctcg gccccaggat gcaactgtgc 2221 acccagcttg ccagattttt ccccattaca cccccagtgt ggcatatcct tggtccccag 2281 aggcacaccc cttgatctgt ggacctccag gcctggacaa gaggctgcta ccagaaaccc 2341 caggcccctg ttactcaaat tcacagccag tgtggttgtg cctgactcct cgccagcccc 2401 tggaaccaca tccacctggg gaggggcctt ctgaatggag ttctgacacc gcagagggca 2461 ggccatgccc ttatccgcac tgccaggtgc tgtcggccca gcctggctca gaggaggaac 2521 tcgaggagct gtgtgaacag gctgtgtgag atgttcaggc ctagctccaa ccaagagtgt 2581 gctccagatg tgtttgggcc ctacctggca cagagtcctg ctcctgggaa aggaaaggac 2641 cacagcaaac accattcttt ttgccgtact tcctagaagc actggaagag gactggtgat 2701 ggtggaggg //