LOCUS BC108916 867 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens VENT homeobox homolog (Xenopus laevis), mRNA (cDNA
clone MGC:119911 IMAGE:40015553), complete cds.
ACCESSION BC108916
VERSION BC108916.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 867)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 867)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 8 Row: o Column: 18.
FEATURES Location/Qualifiers
source 1..867
/db_xref="H-InvDB:HIT000339172"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119911 IMAGE:40015553"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CTAACACA sequenced from
the reverse primer"
gene 1..867
/gene="VENTX"
/gene_synonym="HPX42B"
/gene_synonym="NA88A"
/db_xref="GeneID:27287"
/db_xref="HGNC:HGNC:13639"
/db_xref="MIM:607158"
CDS 12..788
/gene="VENTX"
/gene_synonym="HPX42B"
/gene_synonym="NA88A"
/codon_start=1
/product="VENT homeobox homolog (Xenopus laevis)"
/protein_id="AAI08917.1"
/db_xref="GeneID:27287"
/db_xref="HGNC:HGNC:13639"
/db_xref="MIM:607158"
/translation="MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGS
LPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQ
VRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFS
GSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGA
SCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF"
BASE COUNT 137 a 324 c 246 g 160 t
ORIGIN
1 acctggccgc catgcgcctc tcctcctccc cacctcgtgg cccgcagcag ctctccagct
61 ttggctccgt ggactggctc tcccagagca gctgctcagg gccgacccac acccccaggc
121 ctgccgactt ctccctgggg agcctccctg gcccgggcca gacatccggc gccagggagc
181 cccctcaggc cgtcagcatc aaggaggccg ccgggtcctc aaatctgcct gcgccggaga
241 ggaccatggc cgggttgagt aaggagccaa ataccttgcg ggccccccgt gtccgcacag
301 ccttcaccat ggagcaggtc cgcaccttgg agggcgtctt ccagcaccac cagtacctga
361 gccctctgga gcggaagagg ctggccaggg agatgcagct ctcagaggtc cagataaaaa
421 cctggtttca gaatcgccgc atgaaacaca aacggcaaat gcaggacccc cagctgcaca
481 gccccttctc ggggtctctc catgcgcccc cagctttcta ctcaacgtct tctggccttg
541 ccaatggcct gcagctgctg tgcccttggg cacccctgtc cgggccccag gctctgatgc
601 tgccccctgg ctccttctgg ggtctctgcc aagtggcaca agaggccctg gcatctgcgg
661 gagcttcctg ctgcgggcag cctctggcgt cccacccccc taccccaggc cggccttcgc
721 tgggaccagc cctgtccacg gggccccggg gcctgtgtgc tatgccacag acgggggatg
781 cattttgagg aggcacctct gactcccaca ctcgcggtct tgctgatcgc acctggctcc
841 tacctggagg actcagttgt tctgttt
//