LOCUS BC108903 1846 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens SNW domain containing 1, mRNA (cDNA clone MGC:119379
IMAGE:40006529), complete cds.
ACCESSION BC108903
VERSION BC108903.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1846)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1846)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 8 Row: g Column: 6.
FEATURES Location/Qualifiers
source 1..1846
/db_xref="H-InvDB:HIT000339159"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119379 IMAGE:40006529"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGTACATT sequenced from
the reverse primer"
gene 1..1846
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="MIM:603055"
CDS 21..1631
/gene="SNW1"
/gene_synonym="Bx42"
/gene_synonym="NCOA-62"
/gene_synonym="Prp45"
/gene_synonym="PRPF45"
/gene_synonym="SKIP"
/codon_start=1
/product="SNW domain containing 1"
/protein_id="AAI08904.1"
/db_xref="GeneID:22938"
/db_xref="HGNC:HGNC:16696"
/db_xref="MIM:603055"
/translation="MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPY
GYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIA
RQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVA
AAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKI
PRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQ
TVHINENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARER
RAGIKTHVEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVI
ALGVPNPRTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRP
SKNLDKDMYGDDLEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEEDPFGLDKFLEEA
KQHGGSKRPSDSSRPKEHEHEGKKRRKE"
BASE COUNT 610 a 363 c 473 g 400 t
ORIGIN
1 gctggaagaa gcggaagaag atggcgctca ccagcttttt acctgcacct actcagctat
61 ctcaggacca gcttgaggct gaagaaaagg caagatccca gagatcacgg cagacctcac
121 tggtctcctc ccgaagagaa cctcccccgt acggataccg gaaaggctgg atacctcggt
181 tattagagga ttttggagat ggaggtgctt ttccagagat ccatgtggcc cagtatccac
241 tggatatggg acgaaagaaa aaaatgtcga atgcgctggc cattcaggtg gattctgaag
301 gaaaaattaa atatgatgca attgctcgac aaggacagtc aaaagacaag gtcatttata
361 gcaaatacac tgacctggtt ccaaaggagg ttatgaatgc agatgatcca gacctgcaaa
421 ggcccgatga agaagctatt aaagagataa cagaaaagac aagagtagcc ttagaaaaat
481 ctgtatcaca gaaggtcgcc gcagccatgc cagttcgagc agctgacaaa ttggctcctg
541 ctcagtatat ccgatacaca ccatctcagc aaggagtggc attcaactct ggagctaaac
601 agagggttat tcggatggta gaaatgcaga aagatccaat ggagcctcca aggttcaaga
661 ttaataagaa aattccccgg ggaccacctt ctcctcctgc gcctgtcatg cattctccta
721 gccgaaagat gactgtaaag gaacaacaag agtggaagat tcctccttgt atttctaact
781 ggaaaaatgc aaagggttat acaattccat tagacaaacg tctggctgct gatggaagag
841 gactacagac agtacacata aatgaaaatt tcgccaaatt ggcagaagcc ctctacattg
901 ctgatcggaa ggctcgtgaa gctgtggaaa tgcgtgccca agtagagaga aaaatggctc
961 agaaagaaaa ggaaaaacat gaagagaaac ttagagaaat ggcccagaaa gccagggaaa
1021 gaagagctgg gatcaaaact catgtggaaa aagaggatgg ggaggcacgt gagagggatg
1081 aaatccggca tgacaggcga aaagagagac agcatgaccg gaatctttcc agggcagctc
1141 ctgataagag gtcgaaactt cagagaaatg aaaatcggga tatcagtgaa gttattgctc
1201 tcggtgttcc taatcctcgg acttccaatg aagttcagta tgaccaaagg ctcttcaacc
1261 aatccaaggg tatggacagt ggatttgcag gtggagaaga tgaaatttat aatgtttatg
1321 atcaagcctg gagaggtggt aaagatatgg cccagagtat ttataggccc agtaaaaatc
1381 tggacaagga catgtatggt gatgacctag aagccagaat aaagaccaac agatttgttc
1441 ccgacaagga gttttctggt tcagaccgta gacagagagg ccgagaagga ccagttcagt
1501 ttgaggaaga tccttttggt ttggacaagt ttttggaaga agccaaacag catggtggct
1561 ctaaaagacc ctcagatagc agccgcccca aggaacacga gcatgaaggc aagaagagga
1621 ggaaggaata ggcacaggtc tctccaaagt gaatgaactc ttacccataa ccctaatgat
1681 gcaagtcata tgggggaaca ctttgtaaat ggtcaggata aaaaccaaat ctgggtgcca
1741 gatcccagca ctacttttta ttactggaga aatggggggg atagaaaatt ctactttgaa
1801 ttatttagtt ttttttaaag agtgggttgt gtttgtgctt ctccca
//