LOCUS BC108287 2143 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens zinc finger protein 516, mRNA (cDNA clone
IMAGE:3872546), partial cds.
ACCESSION BC108287
VERSION BC108287.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2143)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2143)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 217 Row: f Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..2143
/db_xref="H-InvDB:HIT000339026"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3872546"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2143
/gene="ZNF516"
/gene_synonym="HsT287"
/db_xref="GeneID:9658"
/db_xref="HGNC:HGNC:28990"
CDS <1..1553
/gene="ZNF516"
/gene_synonym="HsT287"
/codon_start=3
/product="ZNF516 protein"
/protein_id="AAI08288.1"
/db_xref="GeneID:9658"
/db_xref="HGNC:HGNC:28990"
/translation="CFSEEVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILE
NSSRETSRRQEQHRFSMDLKMPAFHPKQEVPVPGDGVEFPSSTGAEGQTGHPAEKLSD
LHNKEHSGGGKRALAPDLMPLDLSARSTRDDPSNKETASSLQAALVVHPCPYCSHKTY
YPEVLWMHKRIWHRVSCNSVAPPWIQPNGYKSIRSNLVFLSRSGRTGPPPALGGKECQ
PLLLARFTRTQVPGGMPGSKSGSSPLGVVTKAASMPKNKESHSGGPCALWAPGPDGYR
QTKPCHGQEPHGAATQGPLAKPRQEASSKPVPAPGGGGFSRSATPTPTVIARAGAQPS
ANSKPVEKFGVPPAGAGFAPTNKHSAPDSLKAKFSAQPQGPPPAKGEGGAPPLPPREP
PSKAAQELRTLATCAAGSRGDAALQAQPGVAGAPPVLHSIKQEPVAEGHEKRLDILNI
FKTYIPKDFATLYQGWGVSGPGLEHRGTLRTQARPGEFVCIECGKSFHQPGHLRAHMR
AHSGERPF"
BASE COUNT 497 a 636 c 617 g 393 t
ORIGIN
1 gctgcttttc cgaagaggtg acttcgaccg agctctccag tggagaccag agtcacaaga
61 tgggagataa cgcctcggaa agagacaccg gcgagtccaa ggcagggatc gcagcttctg
121 tgtccatact tgaaaacagt agcagagaga cttctagaag gcaagagcag cacagatttt
181 ctatggactt aaagatgcca gcatttcacc ccaagcagga ggtgcccgtc cctggtgatg
241 gtgtggagtt cccttccagt acgggagcgg agggccagac gggtcaccct gcagaaaagc
301 tgtccgattt gcacaacaag gaacactctg ggggagggaa gcgggcgctg gccccagacc
361 tcatgccgct agatttaagt gcgaggtcga cgcgggatga ccccagcaat aaggagacgg
421 cctcctccct gcaggcggct ttagtcgttc acccgtgtcc ttactgcagc cacaagacct
481 actaccccga ggtcctgtgg atgcacaaac gcatctggca ccgcgtcagc tgcaactccg
541 tggctccccc gtggattcag cccaatggtt acaaaagcat cagaagcaat ttggttttcc
601 tttcccggag cggacgcacg ggccccccgc ctgccctcgg tggcaaagaa tgccagcctt
661 tgctccttgc tcggttcacc cgcactcagg tgccaggggg gatgccgggg tccaaaagtg
721 gctcttctcc cctgggagtg gtcacaaaag ccgctagcat gcctaagaat aaggagagcc
781 attccggagg tccctgcgct ctgtgggcgc ccggccctga cgggtatcga cagaccaaac
841 cttgtcacgg ccaggagcca catggcgcgg ccacacaggg gcccctggcc aagcccaggc
901 aggaggctag ctccaaaccg gtgcctgccc cgggtggcgg gggcttcagc aggagcgcca
961 cccctacgcc caccgtcatc gcccgggctg gcgcgcagcc ctcggccaat agcaagcctg
1021 tggagaagtt tggggtcccc ccagcggggg ctggctttgc ccccacaaat aagcacagtg
1081 ccccggactc cctgaaagcc aaattcagtg ctcagcctca gggtccacct cctgcaaagg
1141 gcgaaggggg cgctcctcct ctacctcccc gcgagccccc ctcgaaggca gcccaggagc
1201 tgaggactct ggccacctgt gctgcggggt ccaggggcga cgcggccttg caggcccagc
1261 ccggcgtggc tggggcgccc cccgtcctac actccatcaa acaggagccg gtggccgagg
1321 ggcatgagaa gcgcctggac atcctcaaca tctttaagac gtacattcca aaggactttg
1381 cgaccctcta ccagggatgg ggtgtcagcg gccctgggtt ggagcacaga gggacactcc
1441 ggacgcaggc ccggccagga gagttcgtct gcatcgagtg cggaaagagc ttccaccagc
1501 ccggccacct cagggcccac atgcgggcac actcagggga gagaccattc taacacaggt
1561 accgtccaga cagtgcctct gagaaaggga acctaaaggc gtgtttccga cgcaccccag
1621 gtccccgtaa cggccattag cagtaccctc acgatgtccc agcagcctcc cacctgtgac
1681 ctggccgctc catggaagaa cagccgggga actcctgagc agacacctca catcccgagc
1741 cgctgcgctg gagtggaaac tgaaggcaga tgcctctcct tgttaaacgt tcagaaataa
1801 atgaagatgc tatattctag aaatacatgt agatactata tacgcattta cgtgctcatc
1861 gtccatagtc ccatattttc ttataataaa cagtagtact ggcaggcaca gtaggggcac
1921 aaggcatctg tcttattcaa gacaagtttg agacactgga aaaaaagata cttgttgtgt
1981 gtgttggaca gagtggcgag gctgagcact gtcacagggg cctcccatgt taagagggac
2041 tgtggggata atgtcagaac aagacgtggt ggatttgagg ttgatcgagt attaatacta
2101 ctgcctctcc ttgtcttagt gggtatttaa aaaaaaaaaa aaa
//