LOCUS BC107801 1160 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B, mRNA (cDNA clone IMAGE:4072707), partial cds.
ACCESSION BC107801
VERSION BC107801.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1160)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1160)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 61 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922357.
FEATURES Location/Qualifiers
source 1..1160
/db_xref="H-InvDB:HIT000338931"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4072707"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_61"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>1160
/gene="PRPF38B"
/gene_synonym="RP11-293A10.1"
/db_xref="GeneID:55119"
/db_xref="HGNC:HGNC:25512"
CDS 10..>1160
/gene="PRPF38B"
/gene_synonym="RP11-293A10.1"
/codon_start=1
/product="PRPF38B protein"
/protein_id="AAI07802.1"
/db_xref="GeneID:55119"
/db_xref="HGNC:HGNC:25512"
/translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG
NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKG
SRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRAL
GFMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLF
PRIPVPVQKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRS
RSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRE
RHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGKKKKKKKK"
BASE COUNT 382 a 235 c 329 g 214 t
ORIGIN
1 gggggcaaca tggctaacaa cagccccgcg ctgacaggca actcgcagcc gcagcaccag
61 gcggctgcag ctgcggctca gcaacagcag cagtgcggcg gcggcggcgc taccaagccg
121 gcggtctccg gcaagcaggg caatgtgctc ccgctctggg gcaacgagaa gaccatgaac
181 ctcaacccca tgatcctgac caacatcctg tcgtcgcctt acttcaaagt acagctctac
241 gagctcaaga cctaccacga ggtggtggac gagatctact ttaaggtcac gcacgttgaa
301 ccatgggaga aaggaagcag gaaaacagcg ggccagacag ggatgtgcgg aggggttcga
361 ggtgttggaa caggaggaat tgtttctaca gcattttgcc tgttatacaa attatttacc
421 ctgaagttaa ctcgaaagca agtgatgggt cttataacac acacagactc tccatatatt
481 agagcgcttg gatttatgta tataagatat acacagcccc ctacagatct gtgggactgg
541 tttgaatcct tccttgatga tgaagaggac ctagatgtga aggctggtgg aggctgtgta
601 atgaccattg gagaaatgct acgatctttt ctcacaaaac tggagtggtt ttctaccttg
661 tttccaagaa ttccagttcc agttcaaaag aatattgatc aacagattaa aacccgacct
721 agaaaaatca agaaagatgg gaaggaaggt gctgaggaaa tagacagaca tgttgaacgc
781 agacgttcaa ggtctccaag gagatctctg agtccacgga ggtccccaag aaggtcaaga
841 agtagaagtc atcatcggga gggccatggg tcttctagtt ttgacagaga attagaaaga
901 gagaaagaac gccagcgact agagcgtgaa gccaaagaaa gggagaaaga acggcgaaga
961 tcccgaagta ttgaccgggg gttagaacgc aggcgcagca gaagtaggga aaggcataga
1021 agtcgcagtc gaagtcgtga taggaaaggg gatagaaggg acagggatcg agaaagagag
1081 aaagaaaatg agagaggtag aagacgagat cgtgactatg ataaggaaag aggaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa
//