LOCUS BC107800 1390 bp mRNA linear HUM 27-JUN-2007
DEFINITION Homo sapiens AT rich interactive domain 5B (MRF1-like), mRNA (cDNA
clone IMAGE:4105813), partial cds.
ACCESSION BC107800
VERSION BC107800.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1390)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1390)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 61 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1390
/db_xref="H-InvDB:HIT000338930"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4105813"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>1390
/gene="ARID5B"
/gene_synonym="MRF2"
/gene_synonym="RP11-341A19.1"
/db_xref="GeneID:84159"
/db_xref="HGNC:HGNC:17362"
/db_xref="MIM:608538"
CDS 16..>1390
/gene="ARID5B"
/gene_synonym="MRF2"
/gene_synonym="RP11-341A19.1"
/codon_start=1
/product="ARID5B protein"
/protein_id="AAI07801.1"
/db_xref="GeneID:84159"
/db_xref="HGNC:HGNC:17362"
/db_xref="MIM:608538"
/translation="MEPNSLQWVGSPCGLHGPYIFYKAFQFHLEGKPRILSLGDFFFV
RCTPKDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKV
IVKLEDLVKWVHSDFSKWRCGFHAGPVKTEALGRNGQKEALLKYRQSTLNSGLNFKDV
LKEKADLGEDEEETNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSR
NPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRKKKPCPQRRDSFSGVKDSNNNSD
GKAVAKVKCEARSALTKPKNNHNCKKVSNEEKPKVAIGEECRADEQAFLVALYKYMKE
RKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAAT
CTRRHYERLILPYERFIKGEEDKPLPPIKPRKQENSSQENENKTKVSGTKRIKHEIPK
KKKKKKKK"
BASE COUNT 462 a 308 c 329 g 291 t
ORIGIN
1 ggggagaacg tcgagatgga gcccaactca ctccagtggg tcggctcacc gtgtggcttg
61 cacggacctt acattttcta caaggctttt caattccacc ttgaaggcaa accaagaatt
121 ttgtcccttg gcgacttttt ctttgtaaga tgtacgccaa aggatccgat ttgcatagcg
181 gagctccagc tgttgtggga agagaggacc agccggcaac ttttatccag ctctaaactt
241 tatttcctcc cagaagacac tccccagggc agaaatagcg accatggcga ggatgaagtc
301 attgctgttt ccgaaaaggt gattgtgaag cttgaagacc tggtcaagtg ggtacattct
361 gatttctcca agtggagatg tggcttccac gctggaccag tgaaaactga ggccttggga
421 aggaatggac agaaggaagc tctgctgaag tacaggcagt caaccctaaa cagtggactc
481 aacttcaaag acgttctcaa ggagaaggca gacctggggg aggacgagga agaaacgaac
541 gtgatagttc tcagctaccc ccagtactgc cggtaccgct cgatgctgaa acgcatccag
601 gataagccat cttccattct aacggaccag tttgcattgg ccctgggggg cattgcagtg
661 gtcagcagga accctcagat cctgtactgt cgggacacct ttgaccaccc gactctcata
721 gaaaacgaga gtatatgcga tgagtttgcg ccaaatctta aaggcagacc acgcaaaaag
781 aaaccatgcc cacaaagaag agattcattc agtggtgtta aggattccaa caacaattcc
841 gatggcaaag ccgttgccaa ggtgaaatgt gaggccaggt cagccttgac caagccgaag
901 aataaccata actgtaaaaa agtctcaaat gaagaaaaac caaaggttgc cattggtgaa
961 gagtgcaggg cagatgaaca agccttcttg gtggcacttt ataaatacat gaaagaaagg
1021 aaaacgccga tagaacgaat accctattta ggttttaaac agattaacct ttggactatg
1081 tttcaagctg ctcaaaaact gggaggatat gaaacaataa cagcccgccg tcagtggaaa
1141 catatttatg atgaattagg cggtaatcct gggagcacca gcgctgccac ttgtacccgc
1201 agacattatg aaagattaat cctaccatat gaaagattta ttaaaggaga agaagataag
1261 cccctgcctc caatcaaacc tcggaaacag gagaacagtt cacaggaaaa tgagaacaaa
1321 acaaaagtat ctggaaccaa acgcatcaaa catgaaatac caaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa
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