LOCUS BC107768 2280 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens hippocampus abundant transcript 1, mRNA (cDNA clone
IMAGE:4720459), partial cds.
ACCESSION BC107768
VERSION BC107768.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2280)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2280)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 61 Row: f Column: 13.
FEATURES Location/Qualifiers
source 1..2280
/db_xref="H-InvDB:HIT000338898"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4720459"
/tissue_type="Placenta"
/clone_lib="NIH_MGC_79"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..2280
/gene="HIAT1"
/gene_synonym="DKFZP564L0864"
/db_xref="GeneID:64645"
/db_xref="HGNC:HGNC:23363"
/db_xref="IMGT/GENE-DB:23363"
/db_xref="MIM:23363"
CDS <1..1222
/gene="HIAT1"
/gene_synonym="DKFZP564L0864"
/codon_start=2
/product="HIAT1 protein"
/protein_id="AAI07769.1"
/db_xref="GeneID:64645"
/db_xref="HGNC:HGNC:23363"
/db_xref="IMGT/GENE-DB:23363"
/db_xref="MIM:23363"
/translation="GFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFA
VISVSGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYG
DSLVVVLATAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDS
IVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLS
LLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSR
TADADQQGVVQGMITGIRGLCNGLGPALYGFIFYIFHVELKELPITGTDLGTNTSPQH
HFEQNSIIPGPPFLFGACSVLLALLVALFIPEHTNLSLRSSSWRKHCGSHSHPHNTQA
PGEAKEPLLQDTNV"
BASE COUNT 661 a 435 c 443 g 741 t
ORIGIN
1 gggattcctt agtgccccgc ttattggtgc tctttctgat gtttggggcc gaaaatcctt
61 cttgctgcta acggtgtttt tcacatgtgc cccaattcct ttaatgaaga tcagcccatg
121 gtggtacttt gctgttatct ctgtttctgg ggtttttgca gtgacttttt ctgtggtatt
181 tgcatacgta gcagatataa cccaagagca tgaaagaagt atggcttatg gactggtttc
241 agcaacattt gctgcaagtt tagtcaccag tcctgcaatt ggagcttatc ttggacgagt
301 atatggggac agcttggtgg tggtcttagc tacagcaata gctttgctag atatttgttt
361 tatccttgtt gctgtgccag agtcgttgcc tgagaaaatg cggccagcat cctggggagc
421 acccatttcc tgggaacaag ctgacccttt tgcgtcctta aaaaaagtcg gccaagattc
481 catagtgctg ctgatctgca ttacagtgtt tctctcctac ctaccggagg caggccaata
541 ttccagcttt tttttatacc tcagacagat aatgaaattt tcaccagaaa gtgttgcagc
601 gtttatagca gtccttggca ttctttccat tattgcacag accatagtct tgagtttact
661 tatgaggtca attggaaata agaacaccat tttactgggt ctaggatttc aaatattaca
721 gttggcatgg tatggctttg gttcagaacc ttggatgatg tgggctgctg gggcagtagc
781 agccatgtct agcatcacct ttcctgctgt cagtgcactt gtttcacgaa ctgctgatgc
841 tgatcaacag ggtgtcgttc aaggaatgat aacaggaatt cgaggattat gcaatggtct
901 gggaccggcc ctctatggat tcattttcta catattccat gtggaactta aagaactgcc
961 aataacagga acagacttgg gaacaaacac aagccctcag caccactttg aacagaattc
1021 catcatccct ggccctccct tcctatttgg agcctgttca gtactgctgg ctctgcttgt
1081 tgccttgttt attccggaac ataccaattt aagcttaagg tccagcagtt ggagaaagca
1141 ctgtggcagt cacagccatc ctcataatac acaagcgcca ggagaggcca aagaaccttt
1201 actccaggac acaaatgtgt gacgactgaa atcaggaaga tttttctatc agcacccagg
1261 tcttagtttt cacctctagt tctggatgta cattccattt ccatccacag tgtactttaa
1321 gattgtctta agaaatgtat ctgcatgaac tccgtgggaa ctaaaggaag tgggaactta
1381 gaaccagaca gttttccaaa gatgttacaa tttcttttga aaaacctttt gtttattagc
1441 accaatttct cgccactaag ctatttgttt tattatacat cctttaatta aaaactatat
1501 atgtaacttc ttagatatta gcaaatgtct ctgctaccat ttccttaagg tgttgagctt
1561 taactctatg ctgactcagt gagacacagt aggtagtatg gttgtggacc tatttgtttt
1621 aacattgtaa aattttgagt cagattttaa tattgtaaaa tcttgggtca aataattcaa
1681 agccttaatg cagatgcact aaaacaaaga aatggtaaat gaattgtttg catttaaaaa
1741 aaaaaaactc ttaagaaaac tgtactaaat ctgaatcatg ttttgagctt gtttgcagta
1801 cttttaaaca ttattcacta ctgtttttga agtgagaaag tatcagccat ttagcattta
1861 agttggggta tttagagcct gtaatctaaa tgctggctca aatttattcc ccagctactt
1921 cttataccac tattctttta atgtttgcat aatcataagc acctcaacac ttgaatacat
1981 aatctaaaaa ttatatagta aagctggtag ccttgaaaat gtcagtgtga tatctattat
2041 gtagataaat atatatagtg gcctttcagg actgtcacag taacacttta tttacagagc
2101 taatgtttgt cctaaatttt caggacccta gaggagagct ttatacaatt accgatgtga
2161 atttctctaa agtgtatatt tttgtgtcca gttatattat ttaaaaaagt gttactttgt
2221 aaaaattgta tataaagaac tgtatagttc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//