LOCUS BC107741 1353 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high-mobility group nucleosome binding domain 1, mRNA
(cDNA clone MGC:104230 IMAGE:6495117), complete cds.
ACCESSION BC107741
VERSION BC107741.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1353)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1353)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: NCI
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 61 Row: i Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255932.
FEATURES Location/Qualifiers
source 1..1353
/db_xref="H-InvDB:HIT000338871"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104230 IMAGE:6495117"
/tissue_type="Pooled, 40 cell lines"
/clone_lib="NIH_MGC_142"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1353
/gene="HMGN1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
CDS 211..513
/gene="HMGN1"
/codon_start=1
/product="high-mobility group nucleosome binding domain 1"
/protein_id="AAI07742.1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
/translation="MPKRKVSSTEGAAKEEPKRRSARLSAKPPAKVEANPKKAAAKDK
SSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD"
BASE COUNT 407 a 273 c 323 g 350 t
ORIGIN
1 gggggggggg aggaggaggc gggctcccaa tccggttcca tccggttctc ccaccgcccc
61 cgctgtgggt ctcagcagct cgggcggcgg gaggagtggc agcggcaagg cagcccagtt
121 tcgcgaaggc tgtcggcgcg ccgcggcccg caggcacccg gcacgcgcct tccccgcagg
181 cacccggcac gcgccttccc cgccgccacg atgcccaaga ggaaggtcag ctccaccgaa
241 ggcgccgcca aggaagagcc caagaggaga tcggcgcggt tgtcagctaa acctcctgca
301 aaagtggaag cgaatccgaa aaaggcagca gcgaaggata aatcttcaga caaaaaagtg
361 caaacaaaag ggaaaagggg agcaaaggga aaacaggccg aagtggctaa ccaagaaact
421 aaagaagact tacctgcgga aaacggggaa acgaagactg aggagagtcc agcctctgat
481 gaagcaggag agaaagaagc caagtctgat taataaccat ataccatgtc ttatcagtgg
541 tccctgtctc ccttcttgta caatccagag gaatattttt atcaactatt ttgtaaatgc
601 aagtttttta gtagctctag aaacattttt aagaaggagg gaatcccacc tcatcccatt
661 ttttaagtgt aaatgctttt ttttaagagg tgaaatcatt tgctggttgt ttattttttg
721 gtacaaccag aaaatagtgt gggatattga attatgggag gctctgactg tctcgggtgt
781 cagcttaaca ttccacagat ggggggttag tttttatatc ctataataca aagcatatta
841 aatggcaata tggagtcagt cctgcattta atgtcttgaa cattttaaat tacttctatt
901 accatgttgt tttttagtag aattgtttcc taaagaaaac cactctttga tcatggctct
961 ctctgccaga attgtgtgca ctctgtaaca tctttggttg tggtagtcct gttttcctaa
1021 taactttgtt actgtgctgt gaaagattac agatttgaac atgtagtgta cgtgctattg
1081 agttgtgaac tggtgggccg tatgtaacag ctgaccaacg tgaagatact ggtacttgat
1141 agcctcttaa ggaaaatttg cttccaaatt ttaagctgga aagtcactgg aataacttta
1201 aaaaagaatt acaatacatg gctttttaga atttcgttac gtatgttaag atttgtgtac
1261 aaattgaaat gtctgtactg atcctcaacc aataaaatct cagttatgaa aatattttga
1321 gtcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//