LOCUS BC107139 2369 bp mRNA linear HUM 03-NOV-2006
DEFINITION Homo sapiens patched domain containing 3, mRNA (cDNA clone
MGC:129888 IMAGE:40026539), complete cds.
ACCESSION BC107139
VERSION BC107139.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC107139.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: I Column: 19.
FEATURES Location/Qualifiers
source 1..2369
/db_xref="H-InvDB:HIT000338703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:129888 IMAGE:40026539"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: CTCGTC sequenced from the reverse primer"
gene 1..2369
/gene="PTCHD3"
/gene_synonym="FLJ44037"
/gene_synonym="PTR"
/db_xref="GeneID:374308"
/db_xref="HGNC:HGNC:24776"
CDS 43..2346
/gene="PTCHD3"
/gene_synonym="FLJ44037"
/gene_synonym="PTR"
/codon_start=1
/product="patched domain containing 3"
/protein_id="AAI07140.1"
/db_xref="GeneID:374308"
/db_xref="HGNC:HGNC:24776"
/translation="MPWVEPKPRPGPEQKPKLTKPDSATGPQWYQESQESESEGKQPP
PGPLAPPKSPEPSGPLASEQDAPLPEGDDAPPRPSMLDDAPRLPLELDDAPLPEEETP
EPTAICRHRHRCHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAAPGTGFLYLP
KDEEEDLEEHYTPVGSPAKAERRFVQGHFTTNDSYRFSASRRSTEANFVSLLVVSYSD
SLLDPATFAEVSKLDGAVQDLRVAREKGSQIQYQQVCARYRALCVPPNPILYAWQVNK
TLNLSSISFPAYNHGRHPLYLTGFFGGYILGGSLGMGQLLLRAKAMRLLYYLKTEDPE
YDVQSKQWLTHLLDQFTNIKNILALKKIEVVHFTSLSRQLEFEATSVTVIPVFHLAYI
LIILFAVTSCFRFDCIRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVIIVANSPFL
ILGVGVDDMFIMISAWHKTNLADDIRERMSNVYSKAAVSITITTITNILALYTGIMSS
FRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFC
CFPFGSVPDEHGTDIHPMSLFFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQ
EGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIVTKKVDYWDKDVRQKLENCTKI
FEKNVYVDKNLTEFWLDAYVQYLKGNSQDPNEKNTFMNNIPDFLSNFPNFQHDINISS
SNEIISSRGFIQTTDVSSSAKKKILLF"
BASE COUNT 585 a 612 c 572 g 600 t
ORIGIN
1 ttcacctgct gttcctcctg cgcttcctaa gaggaagaat caatgccgtg ggtggagccc
61 aagcccaggc cggggccgga gcagaagccc aagctcacca aaccggactc tgccaccggg
121 ccgcagtggt accaggaatc tcaggaatcg gagtcggaag gcaagcagcc acccccggga
181 cccctggcac ccccgaaatc ccccgaaccc tcaggacccc tggcgtcgga gcaggatgca
241 cccctgccag agggggacga tgcacccccc cggccgtcga tgctggacga tgcaccccgc
301 ctgccgctgg agctggacga tgcacccctg ccggaggagg aaacccccga acccacggcc
361 atctgcaggc accggcaccg ctgtcacacc gactgcctag aggggctgct gtcccgcacc
421 ttccagtggc tggggtggca ggtgggcgcg cacccctgga tcttcctgct ggcgcccttg
481 atgctgacag ccgcgccggg caccggcttc ctgtacctac ccaaggacga agaagaagac
541 ctagaggagc attacacccc tgtggggagc ccggccaagg cggagcggcg cttcgtgcag
601 ggccatttca ccaccaacga ctcctaccgc ttctccgcct ccaggaggag caccgaagcc
661 aatttcgtct cgcttctggt ggtctcctac agcgactcac tgctggaccc agctaccttt
721 gcagaagtca gcaaactgga cggcgcggtg caggatctgc gcgtggcgcg ggaaaaggga
781 agccagatcc agtaccagca ggtgtgcgcg aggtacaggg cgctctgcgt gccccccaac
841 ccgatcctgt acgcctggca ggtgaacaaa acgctcaacc tgagcagcat ctccttcccc
901 gcctacaacc acggcaggca tcccctctac ctgaccggct tcttcggagg atacatcttg
961 gggggcagcc taggaatggg ccagttactc ctgcgggcca aagccatgcg gctgctgtac
1021 tacctgaaga ccgaggaccc tgagtacgac gtacagagca agcagtggct cacccatttg
1081 ctcgatcaat ttaccaacat taagaacatc ttggccttga aaaaaattga ggtagtccac
1141 tttacatcgc tttccagaca actggaattt gaggcaactt ctgtgactgt gatccctgtg
1201 tttcacctgg catacattct catcattctg tttgcagtca catcatgctt taggtttgac
1261 tgcatacgaa acaaaatgtg tgttgcggcc tttggagtga tttctgcttt cttggcagtg
1321 gtgagcggct ttggcctgct gttgcacatt ggggtgccat ttgtcatcat agttgccaat
1381 tcaccatttc ttattctagg tgttggggtc gatgacatgt ttatcatgat ttctgcctgg
1441 cataagacca accttgcaga tgacatacga gagcggatgt ccaatgtcta ttcaaaagcg
1501 gcagtgtcta ttacaatcac caccatcact aacatcctgg ccttatatac agggattatg
1561 agctctttta ggtctgtaca atgtttttgc atctatacag gaatgaccct gttattttgc
1621 tatttttata acatcacgtg ttttggagca tttatggcct tggatggtaa aagagaagta
1681 gtctgcctat gctggttgaa aaaggctgac ccaaaatggc cctcatttaa aaagttctgc
1741 tgtttcccat ttggttctgt cccagatgaa catggaactg atatccatcc aatgagtttg
1801 ttttttagag actattttgg cccctttctc acaaggagtg agtccaagta ttttgtagtc
1861 tttatatatg ttttgtacat cataagcagt atatatgggt gtttccatgt gcaggaaggt
1921 ttagaccttc gaaatctggc aagtgacgat tcctacatca caccatattt taacgtagag
1981 gagaattatt tttcagatta tggtcccagg gttatggtta ttgttactaa aaaagttgac
2041 tactgggata aagatgttag gcaaaaactg gaaaactgta ctaaaatttt tgaaaaaaat
2101 gtctatgtag ataaaaatct tacagagttt tggttagatg catatgtgca atatttaaaa
2161 ggtaacagcc aagatcctaa tgagaagaat acttttatga acaatattcc tgatttttta
2221 agcaattttc caaattttca gcatgatatt aatatttctt catcaaatga aatcatttct
2281 tcccggggct tcattcagac aacagatgtt tcttcctcag ccaaaaagaa aatattgtta
2341 ttctaattac gacgcatagc tgaagactg
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