LOCUS BC107097 1016 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens uroplakin 1A, mRNA (cDNA clone MGC:129751
IMAGE:40015698), complete cds.
ACCESSION BC107097
VERSION BC107097.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1016)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1016)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 8 Row: p Column: 7.
FEATURES Location/Qualifiers
source 1..1016
/db_xref="H-InvDB:HIT000338661"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:129751 IMAGE:40015698"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GGTAAA sequenced from
the forward primer"
gene 1..1016
/gene="UPK1A"
/gene_synonym="MGC14388"
/gene_synonym="TSPAN21"
/gene_synonym="UP1A"
/gene_synonym="UPIA"
/gene_synonym="UPKA"
/db_xref="GeneID:11045"
/db_xref="HGNC:HGNC:12577"
CDS 1..822
/gene="UPK1A"
/gene_synonym="MGC14388"
/gene_synonym="TSPAN21"
/gene_synonym="UP1A"
/gene_synonym="UPIA"
/gene_synonym="UPKA"
/codon_start=1
/product="UPK1A protein"
/protein_id="AAI07098.1"
/db_xref="GeneID:11045"
/db_xref="HGNC:HGNC:12577"
/translation="MASAAAAEAEKGSPVVVGLLVVGNIIILLSGLSLFAETIWVTAD
QYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFMVASFGVGAALCRRRSMVLTYLVLMLI
VYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSADTDQGQELTRLWDRVMIEQECC
GTSGPMDWVNFTSAFRAATPEVVFPWPPLCCRRTGNFIPLNEEGCRLGHMDYLFTKAG
VQWHNLSSLQRLPPGFKGFSHLSFQSSWDYRAASNTSATPSTATRGVSRGLGLPS"
BASE COUNT 178 a 330 c 273 g 235 t
ORIGIN
1 atggcgtctg cggcagcagc ggaggccgag aagggatctc cagttgtggt gggcctgcta
61 gttgtgggca atatcattat tctgctgtca ggcctgtccc tgtttgctga gaccatatgg
121 gtgacagccg accagtaccg tgtataccca ctgatgggag tctcaggcaa ggatgacgtc
181 ttcgctggtg cctggattgc catcttctgc ggcttctcct tcttcatggt agccagtttt
241 ggtgtgggtg ccgcactctg ccgccgccgg tccatggtcc tcacgtacct ggtgctcatg
301 ctcatcgtct acatcttcga gtgcgcctcc tgcatcacgt cctacaccca ccgtgactac
361 atggtgtcca acccatccct gatcaccaag cagatgctga ccttctacag cgcggacacc
421 gaccagggcc aggagctgac ccgcctctgg gaccgcgtca tgattgagca agaatgctgt
481 ggcacatctg gtcccatgga ctgggtgaac ttcacgtcag ccttccgggc ggccactccg
541 gaggtggtgt tcccctggcc cccactgtgc tgtcgccgga cgggaaactt catccccctc
601 aacgaggagg gctgccgcct ggggcacatg gactacctgt tcaccaaggc tggagtacag
661 tggcacaatc tcagctcact gcagcgtctg cctcccgggt tcaagggatt ctcccacctc
721 agcttccaga gcagctggga ttacagggct gcttcgaaca catcggccac gccatcgaca
781 gctacacgtg gggtatctcg tggtttgggt ttgccatcct gatgtggacg ctcccggtca
841 tgctgatagc catgtatttc tacaccacgc tctgagggac aggaggggaa ggcaacatac
901 acaccccgga ctcctccgca tcctcctcct gcttcctccg ctgggcctgg atggctgcct
961 cacctctcac ctcccaacgt ccctagccct tacgtccttc cacttccaag atcttt
//