LOCUS BC107079 365 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens defensin, alpha 5, Paneth cell-specific, mRNA (cDNA
clone MGC:129728 IMAGE:40014027), complete cds.
ACCESSION BC107079
VERSION BC107079.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 365)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 365)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC107079.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 8 Row: n Column: 6.
FEATURES Location/Qualifiers
source 1..365
/db_xref="H-InvDB:HIT000338643"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:129728 IMAGE:40014027"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: AACCCAAA sequenced from
the forward primer"
gene 1..365
/gene="DEFA5"
/gene_synonym="HD-5"
/db_xref="GeneID:1670"
/db_xref="HGNC:HGNC:2764"
/db_xref="MIM:600472"
CDS 34..318
/gene="DEFA5"
/gene_synonym="HD-5"
/codon_start=1
/product="defensin, alpha 5, Paneth cell-specific"
/protein_id="AAI07080.1"
/db_xref="GeneID:1670"
/db_xref="HGNC:HGNC:2764"
/db_xref="MIM:600472"
/translation="MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAI
SFAGNGLSALRTSGSQARATCYCRTGRCATRESLSGVCEISGRLYRLCCR"
BASE COUNT 78 a 114 c 92 g 81 t
ORIGIN
1 ctcctgctct ccctcctgca ggtgacccca gccatgagga ccatcgccat ccttgctgcc
61 attctcctgg tggccctgca ggcccaggct gagtcactcc aggaaagagc tgatgaggct
121 acaacccaga agcagtctgg ggaagacaac caggaccttg ctatctcctt tgcaggaaat
181 ggactctctg ctcttagaac ctcaggttct caggcaagag ccacctgcta ttgccgaact
241 ggccgttgtg ctacccgtga gtccctctcc ggggtgtgtg aaatcagtgg ccgcctctac
301 agactctgct gtcgctgagc ttcctagata gaaaccaaag cagtgcaaga ttcagttcaa
361 ggtcc
//