LOCUS BC106947 2545 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens glypican 6, mRNA (cDNA clone MGC:126288
IMAGE:40034564), complete cds.
ACCESSION BC106947
VERSION BC106947.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2545)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2545)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC106947.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 14 Row: j Column: 18.
FEATURES Location/Qualifiers
source 1..2545
/db_xref="H-InvDB:HIT000338585"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126288 IMAGE:40034564"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TACACCAA sequenced from the reverse primer"
gene 1..2545
/gene="GPC6"
/db_xref="GeneID:10082"
/db_xref="HGNC:HGNC:4454"
/db_xref="MIM:604404"
CDS 481..2148
/gene="GPC6"
/codon_start=1
/product="glypican 6"
/protein_id="AAI06948.1"
/db_xref="GeneID:10082"
/db_xref="HGNC:HGNC:4454"
/db_xref="MIM:604404"
/translation="MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSL
ADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRH
KKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEM
LNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAA
RTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKG
CLANQADLDTEWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVS
AKVFQGCGQPKPAPALRSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLVTDIKEKL
KLSKKVWSALPYTICKDESVTAGTSNEEECWNGHSKARYLPEIMNDGLTNQINNPEVD
VDITRPDTFIRQQIMALRVMTNKLKNAYNGNDVNFQDTSDESSGSGSGSGCMDDVCPT
EFEFVTTEAPAVDPDRREVDSSAAQRGHSLLSWSLTCIVLALQRLCR"
BASE COUNT 620 a 662 c 654 g 609 t
ORIGIN
1 cacaccaaca gacacacgcg cgcatacaca ctcgctctcg cttgtccatc tccctcccgg
61 gggagccggc gcgcgctccc acctttgccg cacactccgg cgagccgagc ccgcagcgct
121 ccaggattct gcggctcgga actcggattg cagctctgaa cccccatggt ggttttttaa
181 acacttcttt tccttctctt cctcgttttg attgcaccgt ttccatctgg gggctagagg
241 agcaaggcag cagccttccc agccagccct tgttggcttg ccatcgtcca tctggcttat
301 aaaagtttgc tgagcgcagt ccagagggct gcgctgctcg tcccctcggc tggcagaagg
361 gggtgacgct gggcagcggc gaggagcgcg ccgctgcctc tggcgggctt tcggcttgag
421 gggcaaggtg aagagcgcac cggccgtggg gtttaccgag ctggatttgt atgttgcacc
481 atgccttctt ggatcggggc tgtgattctt cccctcttgg ggctgctgct ctccctcccc
541 gccggggcgg atgtgaaggc tcggagctgc ggagaggtcc gccaggcgta cggtgccaag
601 ggattcagcc tggcggacat cccctaccag gagatcgcag gggaacactt aagaatctgt
661 cctcaggaat atacatgctg caccacagaa atggaagaca agttaagcca acaaagcaaa
721 ctcgaatttg aaaaccttgt ggaagagaca agccattttg tgcgcaccac ttttgtgtcc
781 aggcataaga aatttgacga atttttccga gagctcctgg agaatgcaga aaagtcacta
841 aatgatatgt ttgtacggac ctatggcatg ctgtacatgc agaattcaga agtcttccag
901 gacctcttca cagagctgaa aaggtactac actgggggta atgtgaatct ggaggaaatg
961 ctcaatgact tttgggctcg gctcctggaa cggatgtttc agctgataaa ccctcagtat
1021 cacttcagtg aagactacct ggaatgtgtg agcaaataca ctgaccagct caagccattt
1081 ggagacgtgc cccggaaact gaagattcag gttacccgcg ccttcattgc tgccaggacc
1141 tttgtccagg ggctgactgt gggcagagaa gttgcaaacc gagtttccaa ggtcagccca
1201 accccagggt gtatccgtgc cctcatgaag atgctgtact gcccatactg tcgggggctt
1261 cccactgtga ggccctgcaa caactactgt ctcaacgtca tgaagggctg cttggcaaat
1321 caggctgacc tcgacacaga gtggaatctg tttatagatg caatgctctt ggtggcagag
1381 cgactggagg ggccattcaa cattgagtcg gtcatggacc cgatagatgt caagatttct
1441 gaagccatta tgaacatgca agaaaacagc atgcaggtgt ctgcaaaggt ctttcaggga
1501 tgtggtcagc ccaaacctgc tccagccctc agatctgccc gctcagctcc tgaaaatttt
1561 aatacacgtt tcaggcccta caatcctgag gaaagaccaa caactgctgc aggcacaagc
1621 ttggaccggc tggtcacaga cataaaagag aaattgaagc tctctaaaaa ggtctggtca
1681 gcattaccct acactatctg caaggacgag agcgtgacag cgggcacgtc caacgaggag
1741 gaatgctgga acgggcacag caaagccaga tacttgcctg agatcatgaa tgatgggctc
1801 accaaccaga tcaacaatcc cgaggtggat gtggacatca ctcggcctga cactttcatc
1861 agacagcaga ttatggctct ccgtgtgatg accaacaaac taaaaaacgc ctacaatggc
1921 aatgatgtca atttccagga cacaagtgat gaatccagtg gctcagggag tggcagtggg
1981 tgcatggatg acgtgtgtcc cacggagttt gagtttgtca ccacagaggc ccccgcagtg
2041 gatcccgacc ggagagaggt ggactcttct gcagcccagc gtggccactc cctgctctcc
2101 tggtctctca cctgcattgt cctggcactg cagagactgt gcagataatc ttgggttttt
2161 ggtcagatga aactgcattt tagctatctg aatggccaac tcacttcttt tcttacactc
2221 ttggacaatg gaccatgcca caaaaactta ccgttttcta tgagaagaga gcagtaatgc
2281 aatctgcctc cctttttgtt ttcccaaaga gtaccgggtg ccagactgaa ctgcttcctc
2341 tttccttcag ctatctgtgg ggaccttgtt tattctagag agaattctta ctcaaatttt
2401 tcgtaccagg agattttctt accttcattt gcttttatgc tgcagaagta aaggaatctc
2461 acgttgtgag ggtttttttt tttctcattt aaaataaaaa aggaagaaag aaaataattt
2521 tccttgtaaa atcgggccaa acccc
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