LOCUS BC106177 1049 bp mRNA linear ROD 21-JUL-2006
DEFINITION Mus musculus H3 histone, family 3A, mRNA (cDNA clone MGC:118418
IMAGE:6511787), complete cds.
ACCESSION BC106177
VERSION BC106177.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1049)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1049)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. David Rowe
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: l Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31982294.
FEATURES Location/Qualifiers
source 1..1049
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:118418 IMAGE:6511787"
/tissue_type="Limb, mouse, day 10.5 and 11.5, pool of
undifferentiated limb containing undifferentiated limb
mesenchyme and early condensing mesenchyme."
/clone_lib="NIH_MGC_134"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1049
/gene="H3f3a"
/gene_synonym="H3.3A"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
CDS 91..501
/gene="H3f3a"
/gene_synonym="H3.3A"
/codon_start=1
/product="H3 histone, family 3A"
/protein_id="AAI06178.1"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
/translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
BASE COUNT 322 a 221 c 215 g 291 t
ORIGIN
1 gccgctgccg ctctccaacg ccagcgccgc ctctcgcttg ccgagctcca gccgaaggag
61 aaggggggta agtaaggagg tgtccttacc atggctcgta caaagcagac tgcccgcaaa
121 tccaccggtg gtaaagcacc caggaaacaa ctggctacaa aagccgctcg caagagtgcg
181 ccctctactg gaggggtgaa gaaacctcat cgttacaggc ctggtactgt ggccctccgt
241 gaaatcagac gctatcagaa gtccactgaa cttctgatcc gcaagctccc ctttcagcgt
301 ctggtgcgag aaattgctca ggacttcaaa acagatctgc gcttccagag tgcagctatt
361 ggtgctttgc aggaggcaag tgaggcctat ctggttggcc tttttgaaga taccaatctg
421 tgtgctatcc atgccaaacg tgtaacaatt atgccaaaag atatccagct agcacgccgc
481 atacgcggag aacgtgctta agagtccact atgaggggaa acatttcatt ctcaaaaaaa
541 ttttttttcc tcttcttcct gttatcagta gttctgaatg ttagatattt tttccatggg
601 gtcaaaggta cctaagtata tgattgcgag tggaaacata ggggacagaa tcaggtattg
661 gcgtttctcc acgttcattt gtgtgtgaat ttttaatata aatgcaagat ggaaagcatt
721 aatgcaagca aaatgtttca gtgaacacat ttcaacagtt caactttata acaattataa
781 ataaacctgt taaaattttc tggacaatgc cagcatttgg atttttttaa aataagtaaa
841 tttcttattg acggcaacta aatggtgttt gtagcatttt atcacacagt agattccatc
901 cattcactat acttttctaa ctgagttgtc ctacatacaa gtacatgttt ttaatgttgt
961 cagtcttctg tgctgttcct gtaagtttgc tattaaaata cattaaacta taaaaaaaaa
1021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//