LOCUS BC106086 1841 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens chromosome 20 open reading frame 194, mRNA (cDNA clone
IMAGE:6189246), complete cds.
ACCESSION BC106086
VERSION BC106086.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1841)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1841)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: h Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1841
/db_xref="H-InvDB:HIT000338447"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6189246"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1841
/gene="C20orf194"
/gene_synonym="DKFZp434N061"
/db_xref="GeneID:25943"
/db_xref="HGNC:HGNC:17721"
/db_xref="IMGT/GENE-DB:17721"
/db_xref="MIM:17721"
CDS 170..409
/gene="C20orf194"
/gene_synonym="DKFZp434N061"
/codon_start=1
/product="C20orf194 protein"
/protein_id="AAI06087.1"
/db_xref="GeneID:25943"
/db_xref="HGNC:HGNC:17721"
/db_xref="IMGT/GENE-DB:17721"
/db_xref="MIM:17721"
/translation="MLTQQEIRSIHVKRHLEPLPAGYFYNGTQFVNFFGDKTDFHPLM
DQFMNDYVEEANREIEKYNQELEQQEYHDLFELKP"
BASE COUNT 439 a 455 c 509 g 438 t
ORIGIN
1 aggacccaca ccaccaccag actccaaaag cgtatctcaa gacagcagcg ggtagcagga
61 gtgctacctt gtgttcatcg gctgctccct gaaggaagac agcatcaagg actggctgcg
121 gcagtcagct aagcagaagc ctcagaggaa agccctgaag accaggggga tgctgacgca
181 acaggagatc aggagcatcc acgtaaaacg ccacttggaa cccctacctg caggctactt
241 ttataatggc acccaatttg ttaacttctt tggtgacaaa actgattttc acccactcat
301 ggaccagttc atgaatgact acgtggaaga agccaaccgg gaaattgaga agtataacca
361 ggagctggaa cagcaggagt atcatgacct ctttgagctg aagccctaga ggaaggctgg
421 gcccgtacgt cctgcagaat gtccaccttg gagatggacg aacgggtgtc ttaacctcag
481 ctctcctgga ggcctctccc ttaaggggct gtctttgttc tccttggcct gtgtgtgctg
541 gcttgagtgc atgttgtctt tattccctgt atagcgctga agagcatcac ctgcaccatt
601 gattttgggg gtcgggggaa tactcaagga tgagcagatg gggcctgccc gtctacgtgt
661 gcaactggca gtccaggagc tctgggtttc tgataacagg atctcctttg ggctcttgag
721 gttggggaga agcattagga ttacacagag gagctactgg gacttagaag gaaccctggc
781 tgcctgaact gtggccgtgt ctgggaggcg aggccacgac aggcctcaag cctcagatgc
841 tgctccacga gagccatctt ccccagtgga gtgcctgcct cccctgctag gcccgtttcc
901 ctgaaggagc tggccgtact ggccgtgggc ccagtcctgg gaggagcagc acagccttgc
961 ccaggcccag tccacagagc cagcagcttg ggttgagatg aatgatgtgt tcacaaatga
1021 ggggatttcc cttctggact aaactgaagg agaggcttgt tgctttccag aggtgtgtgg
1081 ctcttaagtt gacatcagct tttccccttg tgggtggttc tttagctctc ctgtcacacc
1141 attcgggtgt cctaatgtag ggacaagagc aagcctgctg ctcaggcccc ctggcgaggc
1201 ttcacctcac tgtggaaggg ggcgtcctgc agctggttag tcttaggcct ggtggctgat
1261 cacttgtggg gtcagtctcc agcacccagc gctcccacaa gccttgccaa ggaaggcctg
1321 cttttcagcc acaaacttca ggaaactcat ccccccgctc cccaaagtgt tgttgctggc
1381 cctgggcttg tgtggctcct gaggattggg aatttcaaat aattgcaata cctgagttag
1441 aattccttct aatggcatcg ttttaagctg gaccataaag cagaggggaa ttacaagtgt
1501 gtcccatgcc tgaccttcat aattggtgtg ggggacaggg gagtcacagc cactgatatt
1561 taggtgatgt ctcttaggac ttcagtgcct cagctacctg aactgtaaat gttttctgaa
1621 tttcacatat ttttttttgc atgccttagg aagaagcaca taggtaaaac cagcagtttc
1681 cagtaatata gggggttttt gagcaaggcc cctggagcag cggagagaca agatggagca
1741 catgtagtct gtgtgcctgg tcacacagag gcctgcatgc aagtagcaaa gcagctctca
1801 agggcttgtc agtaaaatat attagaaaaa aaaaaaaaaa a
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