LOCUS BC106080 1247 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens high-mobility group nucleosome binding domain 1, mRNA
(cDNA clone MGC:117425 IMAGE:3855939), complete cds.
ACCESSION BC106080
VERSION BC106080.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1247)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1247)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 217 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1247
/db_xref="H-InvDB:HIT000338441"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:117425 IMAGE:3855939"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1247
/gene="HMGN1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
CDS 138..440
/gene="HMGN1"
/codon_start=1
/product="high-mobility group nucleosome binding domain 1"
/protein_id="AAI06081.1"
/db_xref="GeneID:3150"
/db_xref="HGNC:HGNC:4984"
/db_xref="MIM:163920"
/translation="MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDK
SSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD"
BASE COUNT 377 a 247 c 293 g 330 t
ORIGIN
1 agcagctcgg gcggcgggag gagtggcagc ggcaaggcag cccagtttcg cgaaggctgt
61 cggcgcgccg cggcccgcag gcacccggca cgcgccttcc ccgcaggcac ccggcacgcg
121 ccttccccgc cgccacgatg cccaagagga aggtcagctc cgccgaaggc gccgccaagg
181 aagagcccaa gaggagatcg gcgcggttgt cagctaaacc tcctgcaaaa gtggaagcga
241 agccgaaaaa ggcagcagcg aaggataaat cttcagacaa aaaagtgcaa acaaaaggga
301 aaaggggagc aaagggaaaa caggccgaag tggctaacca agaaactaaa gaagacttac
361 ctgcggaaaa cggggaaacg aagactgagg agagtccagc ctctgatgaa gcaggagaga
421 aagaagccaa gtctgattaa taaccatata ccatgtctta tcagtggtcc ctgtctccct
481 tcttgtacaa tccagaggaa tatttttatc aactattttg taaatgcaag ttttttagta
541 gctctagaaa catttttaag aaggagggaa tcccacctca tcccattttt taagtgtaaa
601 tgcttttttt taagaggtga aatcatttgc tggttgttta ttttttggta caaccagaaa
661 atagtgtggg atattgaatt atgggaggct ctgactgtct cgggtgtcag cttaacattc
721 cacagatggg gggttagttt ttatatccta taatacaaag catattaaat ggcaatatgg
781 agtcagtcct gcatttaatg tcttgaacat tttaaattac ttctattacc atgttgtttt
841 ttagtagaat tgtttcctaa agaaaaccac tctttgatca tggctctctc tgccagaatt
901 gtgtgcactc tgtaacatct ttgtggtagt cctgttttcc taataacttt gttactgtgc
961 tgtgaaagat tacagatttg aacatgtagt gtacgtgctg ttgagttgtg aactggtggg
1021 ccgtatgtaa cagctgacca acgtgaagat actggtactt gatagcctct taaggaaaat
1081 ttgcttccaa attttaagct ggaaagtcac tggaataact ttaaaaaaga attacaatac
1141 atggcttttt agaatttcgt tacgtatgtt aagatttgtg tacaaattga aatgtctgta
1201 ctgatcctca accaataaaa tctcagttta tgaaaaaaaa aaaaaaa
//