LOCUS BC106062 3049 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens hippocampus abundant transcript-like 1, mRNA (cDNA
clone MGC:117350 IMAGE:6162855), complete cds.
ACCESSION BC106062
VERSION BC106062.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3049)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3049)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: g Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14211858.
FEATURES Location/Qualifiers
source 1..3049
/db_xref="H-InvDB:HIT000338423"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:117350 IMAGE:6162855"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3049
/gene="HIATL1"
/db_xref="GeneID:84641"
/db_xref="HGNC:HGNC:23376"
CDS 70..1527
/gene="HIATL1"
/codon_start=1
/product="hippocampus abundant transcript-like 1"
/protein_id="AAI06063.1"
/db_xref="GeneID:84641"
/db_xref="HGNC:HGNC:23376"
/translation="MPEKRAGAQAAGSTWLQGFGRPSVYHAAIVIFLEFFAWGLLTTP
MLTVLHETFSQHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFP
IPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVS
SPAIGAYLSASYGDSLVVLVATVVALLDICFILVAVPESLPEKMRPVSWGAQISWKQA
DPFASLKKVGKDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMV
GILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMS
SITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYMFHVELTELGP
KLNSNNVPLQGAVIPGPPFLFGACIVLMSFLVALFIPEYSKASGVQKHSNSSSGSLTN
TPERGSDEDIEPLLQDSSIWELSSFEEPGNQCTEL"
BASE COUNT 790 a 642 c 676 g 941 t
ORIGIN
1 cgcggcatga gcgtggagcc gccgccggag ctggaggaga aggcggcgtc ggagcccgag
61 gcgggagcca tgccggagaa gcgcgcgggc gcgcaggccg cggggagcac ctggctacaa
121 ggctttggcc gaccaagtgt gtaccatgct gctattgtca tcttccttga attctttgcg
181 tggggcctgt tgacaactcc aatgttgact gttctacatg aaacattttc tcaacacaca
241 ttcctcatga atggtctcat tcaaggtgta aagggcctgc tctctttttt gagtgcccca
301 ctcattggtg ccctgtctga tgtgtggggg aggaagccct ttctcctcgg cactgtattc
361 tttacctgct tcccaatccc actgatgagg atcagcccat ggtggtattt tgcgatgatt
421 tctgtgtctg gagtcttctc ggtcacgttt tctgttatat ttgcctatgt agctgatgtc
481 actcaggagc acgagcgaag tacagcttat ggatgggtct cagccacctt tgcggctagt
541 cttgtcagca gcccggccat tggagcatat ctttctgcca gttacggaga cagcctcgtt
601 gtgctggtgg ccacagtggt ggctcttctg gacatctgct tcatcttagt ggctgttcca
661 gaatctctgc ctgagaaaat gagaccggtt tcctggggag ctcagatttc ttggaaacaa
721 gcagaccctt ttgcgtcgtt gaagaaagtt ggaaaagatt ctactgtctt actaatctgc
781 atcaccgtgt ttctttcata ccttcctgaa gctggacagt attcaagttt ttttctctat
841 ctcaggcagg tcataggttt tggatctgtt aaaattgcag cattcatagc tatggtagga
901 attctgtcta ttgtggctca gacggccttt cttagcatct tgatgagatc attaggaaat
961 aagaatactg tcctccttgg cttgggcttc cagatgctcc agttagcctg gtacggtttt
1021 ggatcacagg cctggatgat gtgggcagca gggaccgtgg ctgccatgtc cagcatcacg
1081 tttccggcaa tcagtgccct cgtctctcgg aatgcagagt cagatcagca aggagttgcc
1141 caggggatca taactggaat aagaggacta tgcaatggcc tggggccagc actgtatggc
1201 ttcatattct acatgttcca tgtggaactg actgagttgg gcccgaaatt gaattctaac
1261 aacgttcccc tgcagggagc tgtcatccca ggcccgccgt ttttatttgg ggcatgtata
1321 gtccttatgt cttttctggt tgccttattc attcctgaat acagtaaagc cagtggagtt
1381 caaaaacaca gtaacagcag cagcggcagc ctgaccaaca ccccagaacg gggcagtgat
1441 gaggacattg agccactact gcaagacagc agcatctggg agctctcttc atttgaggag
1501 cctgggaatc agtgcactga gctgtaaact cggcagaaag tgggattctg catacgccat
1561 ctctgagagc catggaggga gccacacccc tggtgacttc atggtgctgg atgggagacg
1621 ctagcggcat ccttcagggc caagtttgat aaataccacc gccatcattc tgctcatcct
1681 cctcctgttt tttttttttc tcttacattc tttttttttt tcctgtttat acattagaac
1741 aagataagat ttgaaatact tccttgcaaa taatgtgcaa ctcccaaggt gaaactcaaa
1801 tagaaaaagt catctctctg gtagaaagga tggctttcct gtaatgacta tagagtaaga
1861 gtggcagcaa tctttccatg cccttttcag cagaaggcac agaacagtag cgggactgcc
1921 atctctggca agatttcagg taaagaatct cttcttaatt tctaccttcc tgtttctctg
1981 aatcagccca taggtgttga tgagtggcca ctcttaaaga gtcactcagt atcagggatc
2041 tactgtcttt gttcaaaggt caaataaaaa cctagtctcc ttttattcta ctttctattc
2101 ttagctagaa tgaaactcag catatataca cttctggaca taataatatt gaatagtaat
2161 tacctttact agatgaaaga aattttcatt acaaacttaa atcatgtaaa actcaacaac
2221 tcagattcct ggacctggtg tcctggttgg gtccaaggtg attttacaga agaaaaaaac
2281 aactcaagca ttctggtggc aacatagaga ttgtaggctg cttctaagaa agttattaac
2341 aatttggaaa ttcctaagta ggatgagagt tagtaactgg atacgagtga agtttatatc
2401 caagttcaga ctcaaaggca ttattatgat ttgcttcttc ccatgtcttc catgtcctgc
2461 ttctcaaagt ttttctcatc catcacactc ctgccttaac tgctctgagt atgcatttgt
2521 tttcaattca tctttatttc aatctgttta acttttgaat cgcatgggaa tacgcacatt
2581 aagttccttt ctaaaataag gttttatgaa gctgagtttc acgataagtg tcttgctatt
2641 ttttgagatg ttttatggac aaagaaaact ttacagattt atatgtattt tgctgcacca
2701 gtaaatggac cattaactag ggcccacctt taacagagca cccctttgaa agttttatag
2761 gtatgaaata tatgtagata tttgtaaagg gttttaattt tttttttttg atggggtgct
2821 gtgtaaatct tgtatttata aatgtaatga aggtattgac agaaaaaaat atatacaact
2881 tttataaagg attgtgtact gactgaatac atttaaaaga aaatatattt tgaaacctgt
2941 tctgctatga acagagataa catatctttt tactatgcta ttggttttta ggttaagctt
3001 cctaatgcat aataaattta cagtggttac ttttaaaaaa aaaaaaaaa
//