LOCUS BC105999 3868 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens cell adhesion molecule 2, mRNA (cDNA clone MGC:104534
IMAGE:5259422), complete cds.
ACCESSION BC105999
VERSION BC105999.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3868)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3868)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 198 Row: c Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54607030.
FEATURES Location/Qualifiers
source 1..3868
/db_xref="H-InvDB:HIT000338366"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104534 IMAGE:5259422"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3868
/gene="CADM2"
/gene_synonym="Necl-3"
/gene_synonym="NECL3"
/gene_synonym="synCAM2"
/db_xref="GeneID:253559"
/db_xref="HGNC:HGNC:29849"
/db_xref="IMGT/GENE-DB:IGSF4D"
/db_xref="MIM:609938"
CDS 627..1841
/gene="CADM2"
/gene_synonym="Necl-3"
/gene_synonym="NECL3"
/gene_synonym="synCAM2"
/codon_start=1
/product="CADM2 protein"
/protein_id="AAI06000.1"
/db_xref="GeneID:253559"
/db_xref="HGNC:HGNC:29849"
/db_xref="IMGT/GENE-DB:IGSF4D"
/db_xref="MIM:609938"
/translation="MIWKRSAVLRFYSVCGLLLQAAASKNKVKGSQGQFPLTQNVTVV
EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSD
VSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGS
KPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVDHES
LNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQPLILTCESKGKPLPEPVLWTKDGGE
LPDPDRMVVSGRELNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHDPNALAGQNGP
DHALIGGIVAVVVFVTLCSIFLLGRYLARHKGTYLTNEAKGAEDAPDADTAIINAEGS
QVNAEEKKEYFI"
BASE COUNT 1148 a 803 c 769 g 1148 t
ORIGIN
1 gtgcttcgta gagctgccgc cgtcgccgct gccgctgccg ccacagccgc cgctgcagcc
61 ggagcatccg ggagccgcca ctgccgccgc cgctgccgct gctaccgcca ctagcgctgc
121 ttccactgct tctacctccc ctcccaggac cccgagacac cccgggcgcg agcggcagtg
181 ctgcttgctt gctcctcctc tcccccagcc cttcccctcc gtgacctacc cactccttgc
241 agccctcgcc cgcaccttct ccaacacccc ggcatccctg caccacctgc tcgggcagcc
301 ccggcgggct ctgggacttg ctgtgcgcgc cgagaggaag gcaagctcca aacccctgcc
361 tggaagacgg gctgtcgcgg ctgcaccacc agcaggagga ggaggagaag aaactatttc
421 gcgatacccc attctgcggg tgctttgccg ctgccgcttc tgctgccgcc gatccgagtc
481 cgcgggttcg aacaccgcag cggtggggac ggtgggtccg gcgggcgccg ggaggaggac
541 accagcggag ccctgcactc tcgtgccccg ctcaccagca tctacttgcc ccctcgttcc
601 ttccccagcc ctttagagaa gggaccatga tttggaaacg cagcgccgtt ctccgcttct
661 acagtgtctg cgggctcctg ctacaagcgg ctgcttcaaa gaataaagtt aaaggcagcc
721 aagggcagtt tccactaaca cagaatgtaa ccgttgttga aggtggaact gcaattttga
781 cctgcagggt tgatcaaaat gataacacct ccctccagtg gtcaaatcca gctcaacaga
841 ctctgtactt tgacgacaag aaagctttaa gggacaatag gatcgagctg gttcgcgctt
901 cctggcatga attgagtatt agtgtcagtg atgtgtctct ctctgatgaa ggacagtaca
961 cctgttcttt atttacaatg cctgtcaaaa cttccaaggc atatctcacc gttctgggtg
1021 ttcctgaaaa gcctcagatt agtggattct catcaccagt tatggagggt gacttgatgc
1081 agctgacttg caaaacatct ggtagtaaac ctgcagctga tataagatgg ttcaaaaatg
1141 acaaagagat taaagatgta aaatatttaa aagaagagga tgcaaatcgc aagacattca
1201 ctgtcagcag cacactggac ttccgagtgg accggagtga tgatggagtg gcggtcatct
1261 gcagagtaga tcacgaatcc ctcaatgcca cccctcaggt agccatgcag gtgctagaaa
1321 tacactatac accatcagtt aagattatac catcgactcc ttttccacaa gaaggacagc
1381 ctttaatttt gacttgtgaa tccaaaggaa aaccactgcc agaacctgtt ttgtggacaa
1441 aggatggcgg agaattacca gatcctgacc gaatggttgt gagtggtagg gagctaaaca
1501 ttcttttcct gaacaaaacg gataatggta catatcgatg tgaagccaca aacaccattg
1561 gccaaagcag tgcggaatat gttctcattg tgcatgatcc taatgctttg gctggccaga
1621 atggccctga ccatgctctc ataggaggaa tagtggctgt agttgtattt gtcacgctgt
1681 gttctatctt tctgcttggt cgatatctgg caaggcataa aggaacgtat ttaacaaatg
1741 aagctaaagg agctgaagat gcaccagatg ctgatacagc cattatcaat gctgaaggca
1801 gccaagtcaa tgctgaagag aaaaaagagt atttcattta agatgcaggc caagattctg
1861 agttttacta ccaggctgaa tgctggagaa aactggctat catctttcag aagtcatttc
1921 taccatcgtc tgctaccctt attaactccc atactgtact gctatcagta gccagtgtat
1981 accaacaatc agctgttgaa agcatcattc tttaattact gtaccatcca taatgcagga
2041 catttcttac tgcctaaatt tcacaccatt gctcttttaa catacagtgc ttgaatatac
2101 agccttaaca atgttaatca tctccttgga tcattatatt gagtggtttt tatacattaa
2161 aaaatgtatg cagagttttt ttcccccatt ttttcccctt taagtcatag accttatcag
2221 tttgccattg gacagctttc acaagtaaca ggattaggga aggacataat gtatttaaga
2281 ataagtgaag gttagaggtt tacaattaat gttttctaca tgtctgtctt caaagacaac
2341 atgctttgga aacatatgtc ctagaaaaca taaaattaaa aaaaaacact atagtgtagt
2401 ttttggaatg ttggagatta tactggtaaa gctgtatcga ttgctattga aatatagtat
2461 ttgatacagg agccatgtgt acgaattgca atcatgacat ggtattttct ataattatag
2521 agatcttact attaggatat tgtagcttca tttaccaata aattattcca aatgatttac
2581 tgcttttgga atcacaaata tttaattcat ttctctaatt tgattctata atttatttgc
2641 ttcataaaga ttcacctgcc taaacaatat tgaagtatcc atagggcaca attttcagac
2701 attttagtat ctgtatatag tgcatataat aaatccaatt aaacattatt tgatacatat
2761 ttaacttttt tggctgtatg taattcagtc ataagtaagc attttctaac gtccattata
2821 tccctttagg tattacttaa accaatatta taagtagata acatgtatta gtatttttgt
2881 ctgtatgtcc tagcactgtt caacaacaaa tttttctagt tcttgttaat ttttatttgt
2941 tatacaatgg aagcacaatg ttataaggaa aggtaatttt aagctaacaa ccagtgcaca
3001 gcctcaggtt ttaaattaca accacagttg aataataacc taaaaataaa ttttagtttg
3061 ctaaaaattt acaaattttc attttgcagt tccagagctg cttacctatg ttggtttgcc
3121 aaaaagaagt gtttaagata tgttttctgt ataaatgaac taattcttta tattaaattc
3181 ctgtctatgc attttgtgag gtacaaactg atgaaacagt gagtgataga gaatttctgc
3241 catgctttta actccaaagt gaaagtctct ttctctggat tattttaaaa ttttggcgtg
3301 tttaaccatt aagaaatgct gtattcttaa atatgaaaca gttaatctaa agtcttatta
3361 tttcttctag taaaataaaa tattgttaga ttagttctca ttaaatttat tatatgctaa
3421 agaataaaac tccagttaga tttaaaaaaa tcccatttac aagcattgca cctttaagaa
3481 gaaaacaaat atgacagtat ggtagctata cttgtgatgt ctgacgcatg atggcctatg
3541 gttttaaaaa tagtattgtg gaatatattt ttggggaata agaatggttg agtgcaacat
3601 catgtattaa tatcaaatga aagacaaggg tgctgtatct ttgattattt atcaaaaaag
3661 tataaatctt ttaaggaaaa tgttagaatt ttaaagtttt tttttgattg ttgaagcatt
3721 tatcttgttg atttcttaca aaagaaaaag gacgatgtca gtcaagcagc actttttcag
3781 aatatacaga acataaataa tatgatgtgg ttgagtgtta acataataaa tcatatacag
3841 tatgacattt taagaaaaaa aaaaaaaa
//