LOCUS BC104950 2574 bp mRNA linear HUM 19-JAN-2006 DEFINITION Homo sapiens protocadherin gamma subfamily A, 2, transcript variant 2, mRNA (cDNA clone MGC:132610 IMAGE:8143953), complete cds. ACCESSION BC104950 VERSION BC104950.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2574) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2574) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-SEP-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Ambion cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 3 Row: i Column: 7. FEATURES Location/Qualifiers source 1..2574 /db_xref="H-InvDB:HIT000338038" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:132610 IMAGE:8143953" /tissue_type="Brain, PCR rescued clones" /clone_lib="NIH_MGC_307" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: TGCGTGGC" gene 1..2574 /gene="PCDHGA2" /gene_synonym="PCDH-GAMMA-A2" /db_xref="GeneID:56113" /db_xref="HGNC:HGNC:8700" /db_xref="IMGT/GENE-DB:8700" /db_xref="MIM:606289" CDS 52..2523 /gene="PCDHGA2" /gene_synonym="PCDH-GAMMA-A2" /codon_start=1 /product="protocadherin gamma subfamily A, 2, isoform 2 precursor" /protein_id="AAI04951.1" /db_xref="GeneID:56113" /db_xref="HGNC:HGNC:8700" /db_xref="IMGT/GENE-DB:8700" /db_xref="MIM:606289" /translation="MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSF VGNIAKDLGLEPLALAEQGVRIVSRGRSQLFALNPRSGSLVTANRIDREELCAQSAPC LLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELELKISETTTPGFRIPLKNAHDA DVGENALQKYALNPNDHFSLDVRRGADGNKYPELVLERSLDREEEAVHHLVLVASDGG DPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQ VVYFLEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVI VTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPF KLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADINDNAP AFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYISIN SDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYPA FPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTG EVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSA IPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSSHF VGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLL EEEREETFSQVIYLFTTYVLASLLK" BASE COUNT 596 a 728 c 673 g 577 t ORIGIN 1 tccgcactgg atgctggaag ttgactcgga gaaaattgcg acaggaggga aatggcggct 61 ctgcaaaagt tgccacactg cagaaagctg gtcctgctgt gcttcctttt ggcgaccctg 121 tgggaggcca gggccgggca gattcgctat tctgtgcggg aagagatcga cagaggctcc 181 ttcgtaggca acatcgccaa ggacttgggt ttggagcccc tggcactggc agagcaggga 241 gtccgcatcg tctccagagg taggtcccag ctctttgctc tgaacccgcg aagcggcagc 301 ttggtcactg cgaacaggat agaccgggag gagctctgcg ctcagagcgc accctgtctg 361 ttgaatttta acattctgct ggaggataaa ttgactattt attcagtaga ggtggaaata 421 acagatatta acgataatgc ccctcgcttt ggagtagagg aactggagct aaaaatcagt 481 gaaaccacta cgccaggatt ccggattcct cttaagaatg cgcatgatgc agacgtaggt 541 gagaacgccc ttcagaagta cgcactcaac ccaaatgacc acttctccct ggacgtgcga 601 agaggagctg atgggaacaa gtacccagaa ctggtgctgg agcgctctct ggaccgcgag 661 gaagaggctg ttcaccacct cgttctcgtg gcttctgatg ggggtgaccc agtgctatct 721 ggcacctccc gcatctgcgt gaaggtcctg gatgcgaacg acaatgcgcc tgtttttaca 781 cagcccgagt accgcataag cattccggag aatacgctcg tgggcacccg gatactcacg 841 gtgaccgcca ctgacgcaga tgagggctac tacgctcaag tggtatattt tctagagaaa 901 agccctggag aaacctcaga ggtatttgag cttaagtcaa catctggaga actgacaatc 961 ataaaagatc tagattatga ggatgctaca ttccatgaaa ttgatattga agctcaggat 1021 ggtccgggcc ttctaaccag agcgaaggtt atcgtcacgg ttctggatgt gaatgacaat 1081 gccccagaat tttacatgac atctgctact agctcagttt ctgaagactc tcttccagga 1141 accataattg ggctttttaa tgtacatgat agagactctg ggcagaacgc attcaccacc 1201 tgttcactcc ccgaggatct tccttttaag ttagaaaagt cagtagacaa ttactaccga 1261 ctggttacaa ccagagccct tgacagggaa cagttttcct tttacaacat cactctaacc 1321 gctaaagatg gagggaaccc ctccctgtcc acggatgctc acattttgct ccaggtggca 1381 gacatcaacg acaacgcacc cgccttctcc cgcacatcct actccaccta cattcccgaa 1441 aacaacccca gaggagcctc tgtcttctca gtgacggccc atgaccccga cagcaacgac 1501 aatgctcatg taacttactc tttcgcggag gacactgttc agggggcacc cttatcctct 1561 tacatctcta tcaactccga cactggagta ctctatgcac tgcgctcctt tgattatgag 1621 cagttgcgag acttgcaagt gtgggtgata gcgcgggaca gcgggaaccc tccactcagt 1681 agcaatgtat cattaagcct gttcgtgctg gaccagaacg acaacgcgcc cgagatcctg 1741 taccctgcct tccccacaga cggttccact ggcgtggagc tggcgccccg ctccgcagag 1801 cccggctacc tggtgaccaa ggtggtggcg gtggacagag actcgggcca gaacgcctgg 1861 ctgtcttacc acctgctcaa ggccagcgag ccgggactct tctcggtggg tctgcacacg 1921 ggcgaggtgc gcacggcgcg agccctgctg gacagagacg cgctcaagca gagcctcgtg 1981 gtggccatcc aggaccacgg ccagccccct ctctccgcca ctgtcacgct caccgtggcc 2041 gtggccgaca ggatccccga catcctggcc gacctgggca gcctcgagcc ctccgccata 2101 cccaacgatt cggacctcac tctgtacctg gtggtggcgg tggccgcggt ctcctgcgtc 2161 ttcctggcct tcgtcatcgt gttgctggcg cacaggctgc ggcgctggca caagtcacgc 2221 ctgctgcagg cttcaggagg cagcttgaca ggcatgcaga gctcgcactt tgtgggcgtg 2281 gacggggttc gggctttcct gcagacctat tcccacgagg tctccctcac tgcggactcg 2341 cggaagagcc acctgatttt cccccagccc aactatgcgg acacgctcat cagccaggag 2401 agctgtgaga aaaaggattt tttatcagcg cctcaatctc tactcgaaga agaaagagaa 2461 gaaacgtttt ctcaggtaat ctatcttttc acaacatacg tactagctag tttgctgaag 2521 taattcactt acttgtttac tatatctatt ttgttcccca tatttccttg aggg //