LOCUS       BC104926                2570 bp    mRNA    linear   HUM 21-JUL-2006
DEFINITION  Homo sapiens protocadherin gamma subfamily A, 5, mRNA (cDNA clone
            MGC:132586 IMAGE:8143929), complete cds.
ACCESSION   BC104926
VERSION     BC104926.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2570)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2005) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Mike Brownstein, NIMH
            cDNA Library Preparation: British Columbia Cancer Research Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRCB Plate: 3 Row: h Column: 7.
FEATURES             Location/Qualifiers
     source          1..2570
                     /db_xref="H-InvDB:HIT000338014"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:132586 IMAGE:8143929"
                     /tissue_type="Brain, cerebral cortex and lung, PCR rescued
                     clones"
                     /clone_lib="NIH_MGC_323"
                     /note="Vector: pCR4-TOPO with reversed insert; Clone
                     identification sequence tag: GACAGTGC"
     gene            1..2570
                     /gene="PCDHGA5"
                     /gene_synonym="CDH-GAMMA-A5"
                     /gene_synonym="ME3"
                     /gene_synonym="PCDH-GAMMA-A5"
                     /db_xref="GeneID:56110"
                     /db_xref="HGNC:HGNC:8703"
                     /db_xref="MIM:606292"
     CDS             100..2541
                     /gene="PCDHGA5"
                     /gene_synonym="CDH-GAMMA-A5"
                     /gene_synonym="ME3"
                     /gene_synonym="PCDH-GAMMA-A5"
                     /codon_start=1
                     /product="protocadherin gamma subfamily A, 5"
                     /protein_id="AAI04927.1"
                     /db_xref="GeneID:56110"
                     /db_xref="HGNC:HGNC:8703"
                     /db_xref="MIM:606292"
                     /translation="MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSF
                     VGNIAKDLGLEPQELAERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLC
                     VVNFNILVENKMKIYGVEVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDA
                     DVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGG
                     DPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGK
                     LTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDGGALVASAKVV
                     VTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPF
                     KLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPP
                     NFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSIN
                     SDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPA
                     LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTG
                     EVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILADLGSIKTPI
                     DPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLAGVPASHF
                     VGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSEPLLMSDKVD
                     ANKEERRVQVSFLFR"
BASE COUNT          608 a          706 c          691 g          565 t
ORIGIN      
        1 gcccattttc gtcagggaat atgtacccat cggctttaga taaataagga aacagcaggc
       61 tgaaccagaa ctaagagaaa attgggcaga gagaaggcaa tggcgagtcc acctaggggc
      121 tggggctgcg gagagctgct gctgcccttc atgctcctgg ggacgctgtg cgagccagga
      181 tccgggcaga tccgctactc gatgccggag gagctggaca aaggctcctt cgtcggcaac
      241 atagccaagg accttgggct ggagccccag gagctggcgg agcgcggagt ccgcatcgtc
      301 tccagaggta ggacgcagct ttttgccctg aacccgcgaa gcggcagctt ggtcaccgcg
      361 ggcaggatag accgggagga gctctgcgct cagagcccac tgtgtgtggt gaactttaac
      421 atcttggttg agaacaaaat gaaaatttat ggagtagaag tagaaataat cgatattaat
      481 gataacttcc cgcgtttccg ggatgaagag ttaaaagtaa aagttaatga aaatgcggct
      541 gcagggacac ggttagtgct tcccttcgcg cgggatgcgg atgtgggtgt gaactctctc
      601 cggagttacc agctcagctc caatctgcac ttctctctgg atgtggtaag cggaactgat
      661 ggacaaaagt atccggagct ggtgttggaa cagcccctag accgcgagaa agagactgtt
      721 cacgacctcc tcctcacagc tttagatggc ggagacccgg tactctccgg caccacgcac
      781 atccgtgtta cggtcctcga cgcaaacgac aatgcgcccc tgttcacccc atccgagtac
      841 agcgtgagtg ttccagagaa catacctgtg ggcactcggc tgctcatgct aaccgccacg
      901 gatccagatg agggaataaa cgggaaattg acctactctt ttcgcaatga agaagaaaaa
      961 atttcggaga ctttccaact tgattccaac ctgggggaaa tctcaactct acaatcactg
     1021 gactatgaag aatccagatt ctacctcatg gaagtggtag ctcaggatgg aggcgctctt
     1081 gttgccagcg ctaaggtggt ggtcacagta caggacgtga atgacaatgc ccccgaagtg
     1141 atcctcacct ctctgaccag ttcgatctct gaagactgtc ttcccggaac tgtaatcgcg
     1201 ctgtttagcg tacatgatgg tgattctgga gaaaatggtg agattgcatg ctctattcct
     1261 aggaatttgc cttttaaatt ggagaagtca gttgataatt actatcacct attaacaact
     1321 agggacctgg acagagaaga gacttcagat tataatatca ctttaaccgt catggaccat
     1381 ggaaccccgc ccctctctac agaaagccac atccccttga aagtagcaga cgttaatgac
     1441 aacccaccca atttccctca agcctcctac tccacctctg tcacagaaaa caatcccaga
     1501 ggtgtctcta tcttctctgt gacagcccat gaccccgaca gcggcgacaa cgctcgagtc
     1561 acctactccc tggctgaaga cacatttcag ggggcgccct tgtcctccta tgtatccatt
     1621 aactctgaca ccggtgtcct gtatgctctg agatccttcg actatgagca gttgagagac
     1681 ctacagttgt gggtgacagc cagcgacagt gggaaccctc cacttagcag caacgtgtcg
     1741 ctgagcctgt ttgtgctgga ccagaacgac aatacgcctg agatcctgta ccccgccctc
     1801 cccacagacg gttccacggg cgtggagctg gcgcctcgct ccgcagaacc tggctacctg
     1861 gtgaccaagg tggtagcggt ggacaaagat tcaggccaga acgcctggct gtcctaccgc
     1921 ctgcttaagg ccagcgagcc aggactcttt gcggttgggc tgcacacggg cgaggtgcgc
     1981 acagcgcgag ccctgctgga cagagacgcg ctcaagcaga gcctcgtggt ggccgtcgaa
     2041 gaccatggcc agccccctct gtcagccacc ttcacggtca ccgttgccgt ggccgacagg
     2101 atccctgaca tcctggctga cctaggcagt atcaagaccc ccattgaccc tgaggatctg
     2161 gacctcacac tctatcttgt ggtggcagtg gctgcagtct cctgcgtctt cctggccttc
     2221 gtcatcgtgc tgctggtgct cagactgagg cgctggcaca agtcacgcct gcttcaggct
     2281 gaaggcagca ggttggcggg tgtgcccgcc tcgcactttg tgggcgtgga tggggttcgg
     2341 gctttcctgc agacctattc ccacgaggtc tccctcaccg cggactcgag gaagagtcac
     2401 ctgatctttc cccagcccaa ctacgcagac acgctcctta gtgaagagag ctgtgagaaa
     2461 agcgagcctc ttctgatgtc tgataaggta gatgcaaaca aagaagaacg gcgagttcag
     2521 gttagttttc tctttcggta aggatgacca gaacattttc atttgtttcc
//