LOCUS BC104926 2570 bp mRNA linear HUM 21-JUL-2006 DEFINITION Homo sapiens protocadherin gamma subfamily A, 5, mRNA (cDNA clone MGC:132586 IMAGE:8143929), complete cds. ACCESSION BC104926 VERSION BC104926.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2570) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2570) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-SEP-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Mike Brownstein, NIMH cDNA Library Preparation: British Columbia Cancer Research Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRCB Plate: 3 Row: h Column: 7. FEATURES Location/Qualifiers source 1..2570 /db_xref="H-InvDB:HIT000338014" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:132586 IMAGE:8143929" /tissue_type="Brain, cerebral cortex and lung, PCR rescued clones" /clone_lib="NIH_MGC_323" /note="Vector: pCR4-TOPO with reversed insert; Clone identification sequence tag: GACAGTGC" gene 1..2570 /gene="PCDHGA5" /gene_synonym="CDH-GAMMA-A5" /gene_synonym="ME3" /gene_synonym="PCDH-GAMMA-A5" /db_xref="GeneID:56110" /db_xref="HGNC:HGNC:8703" /db_xref="MIM:606292" CDS 100..2541 /gene="PCDHGA5" /gene_synonym="CDH-GAMMA-A5" /gene_synonym="ME3" /gene_synonym="PCDH-GAMMA-A5" /codon_start=1 /product="protocadherin gamma subfamily A, 5" /protein_id="AAI04927.1" /db_xref="GeneID:56110" /db_xref="HGNC:HGNC:8703" /db_xref="MIM:606292" /translation="MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSF VGNIAKDLGLEPQELAERGVRIVSRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLC VVNFNILVENKMKIYGVEVEIIDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDA DVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPELVLEQPLDREKETVHDLLLTALDGG DPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGK LTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDGGALVASAKVV VTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPF KLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLSTESHIPLKVADVNDNPP NFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSYVSIN SDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILYPA LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTG EVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILADLGSIKTPI DPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLAGVPASHF VGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSEPLLMSDKVD ANKEERRVQVSFLFR" BASE COUNT 608 a 706 c 691 g 565 t ORIGIN 1 gcccattttc gtcagggaat atgtacccat cggctttaga taaataagga aacagcaggc 61 tgaaccagaa ctaagagaaa attgggcaga gagaaggcaa tggcgagtcc acctaggggc 121 tggggctgcg gagagctgct gctgcccttc atgctcctgg ggacgctgtg cgagccagga 181 tccgggcaga tccgctactc gatgccggag gagctggaca aaggctcctt cgtcggcaac 241 atagccaagg accttgggct ggagccccag gagctggcgg agcgcggagt ccgcatcgtc 301 tccagaggta ggacgcagct ttttgccctg aacccgcgaa gcggcagctt ggtcaccgcg 361 ggcaggatag accgggagga gctctgcgct cagagcccac tgtgtgtggt gaactttaac 421 atcttggttg agaacaaaat gaaaatttat ggagtagaag tagaaataat cgatattaat 481 gataacttcc cgcgtttccg ggatgaagag ttaaaagtaa aagttaatga aaatgcggct 541 gcagggacac ggttagtgct tcccttcgcg cgggatgcgg atgtgggtgt gaactctctc 601 cggagttacc agctcagctc caatctgcac ttctctctgg atgtggtaag cggaactgat 661 ggacaaaagt atccggagct ggtgttggaa cagcccctag accgcgagaa agagactgtt 721 cacgacctcc tcctcacagc tttagatggc ggagacccgg tactctccgg caccacgcac 781 atccgtgtta cggtcctcga cgcaaacgac aatgcgcccc tgttcacccc atccgagtac 841 agcgtgagtg ttccagagaa catacctgtg ggcactcggc tgctcatgct aaccgccacg 901 gatccagatg agggaataaa cgggaaattg acctactctt ttcgcaatga agaagaaaaa 961 atttcggaga ctttccaact tgattccaac ctgggggaaa tctcaactct acaatcactg 1021 gactatgaag aatccagatt ctacctcatg gaagtggtag ctcaggatgg aggcgctctt 1081 gttgccagcg ctaaggtggt ggtcacagta caggacgtga atgacaatgc ccccgaagtg 1141 atcctcacct ctctgaccag ttcgatctct gaagactgtc ttcccggaac tgtaatcgcg 1201 ctgtttagcg tacatgatgg tgattctgga gaaaatggtg agattgcatg ctctattcct 1261 aggaatttgc cttttaaatt ggagaagtca gttgataatt actatcacct attaacaact 1321 agggacctgg acagagaaga gacttcagat tataatatca ctttaaccgt catggaccat 1381 ggaaccccgc ccctctctac agaaagccac atccccttga aagtagcaga cgttaatgac 1441 aacccaccca atttccctca agcctcctac tccacctctg tcacagaaaa caatcccaga 1501 ggtgtctcta tcttctctgt gacagcccat gaccccgaca gcggcgacaa cgctcgagtc 1561 acctactccc tggctgaaga cacatttcag ggggcgccct tgtcctccta tgtatccatt 1621 aactctgaca ccggtgtcct gtatgctctg agatccttcg actatgagca gttgagagac 1681 ctacagttgt gggtgacagc cagcgacagt gggaaccctc cacttagcag caacgtgtcg 1741 ctgagcctgt ttgtgctgga ccagaacgac aatacgcctg agatcctgta ccccgccctc 1801 cccacagacg gttccacggg cgtggagctg gcgcctcgct ccgcagaacc tggctacctg 1861 gtgaccaagg tggtagcggt ggacaaagat tcaggccaga acgcctggct gtcctaccgc 1921 ctgcttaagg ccagcgagcc aggactcttt gcggttgggc tgcacacggg cgaggtgcgc 1981 acagcgcgag ccctgctgga cagagacgcg ctcaagcaga gcctcgtggt ggccgtcgaa 2041 gaccatggcc agccccctct gtcagccacc ttcacggtca ccgttgccgt ggccgacagg 2101 atccctgaca tcctggctga cctaggcagt atcaagaccc ccattgaccc tgaggatctg 2161 gacctcacac tctatcttgt ggtggcagtg gctgcagtct cctgcgtctt cctggccttc 2221 gtcatcgtgc tgctggtgct cagactgagg cgctggcaca agtcacgcct gcttcaggct 2281 gaaggcagca ggttggcggg tgtgcccgcc tcgcactttg tgggcgtgga tggggttcgg 2341 gctttcctgc agacctattc ccacgaggtc tccctcaccg cggactcgag gaagagtcac 2401 ctgatctttc cccagcccaa ctacgcagac acgctcctta gtgaagagag ctgtgagaaa 2461 agcgagcctc ttctgatgtc tgataaggta gatgcaaaca aagaagaacg gcgagttcag 2521 gttagttttc tctttcggta aggatgacca gaacattttc atttgtttcc //