LOCUS BC104918 3701 bp mRNA linear HUM 19-JAN-2006
DEFINITION Homo sapiens cell adhesion molecule with homology to L1CAM (close
homolog of L1), mRNA (cDNA clone MGC:132578 IMAGE:8143921),
complete cds.
ACCESSION BC104918
VERSION BC104918.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3701)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3701)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 3 Row: g Column: 23.
FEATURES Location/Qualifiers
source 1..3701
/db_xref="H-InvDB:HIT000338006"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:132578 IMAGE:8143921"
/tissue_type="Brain, cerebral cortex, PCR rescued clones"
/clone_lib="NIH_MGC_286"
/note="Vector: pCR4-TOPO; Clone identification sequence
tag: CACTTAAC"
gene 1..3701
/gene="CHL1"
/gene_synonym="CALL"
/gene_synonym="L1CAM2"
/db_xref="GeneID:10752"
/db_xref="HGNC:HGNC:1939"
/db_xref="IMGT/GENE-DB:1939"
/db_xref="MIM:607416"
CDS 32..3658
/gene="CHL1"
/gene_synonym="CALL"
/gene_synonym="L1CAM2"
/codon_start=1
/product="CHL1 protein"
/protein_id="AAI04919.1"
/db_xref="GeneID:10752"
/db_xref="HGNC:HGNC:1939"
/db_xref="IMGT/GENE-DB:1939"
/db_xref="MIM:607416"
/translation="MEPLLLGRGLIVYLMFLLLKFSKAIEIPSSVQQVPTIIKQSKVQ
VAFPFDEYFQIECEAKGNPEPTFSWTKDGNPFYFTDHRIIPSNNSGTFRIPNEGHISH
FQGKYRCFASNKLGIAMSEEIEFIVPSVPKFPKEKIDPLEVEEGDPIVLPCNPPKGLP
PLHIYWMNIELEHIEQDERVYMSQKGDLYFANVEEKDSRNDYCCFAAFPRLRTIVQKM
PMKLTVNSSNSIKQRKPKLLLPPTESGSESSITILKGEILLLECFAEGLPTPQVDWNK
IGGDLPKGREAKENYGKTLKIENVSYQDKGNYRCTASNFLGTATHDFHVIVEEPPRWT
KKPQSAVYSTGSNGILLCEAEGEPQPTIKWRVNGSPVDNHPFAGDVVFPREISFTNLQ
PNHTAVYQCEASNVHGTILANANIDVVDVRPLIQTKDGENYATVVGYSAFLHCEFFAS
PEAVVSWQKVEEVKPLEGRRYHIYENGTLQINRTTEEDAGSYSCWVENAIGKTAVTAN
LDIRNATKLRVSPKNPRIPKLHMLELHCESKCDSHLKHSLKLSWSKDGEAFEINGTED
GRIIIDGANLTISNVTLEDQGIYCCSAHTALDSAADITQVTVLDVPDPPENLHLSERQ
NRSVRLTWEAGADHNSNISEYIVEFEGNKEEPGRWEELTRVQGKKTTVILPLAPFVRY
QFRVIAVNEVGRSQPSQPSDHHETPPAAPDRNPQNIRVQASQPKEMIIKWEPLKSMEQ
NGPGLEYRVTWKPQGAPVEWEEETVTNHTLRVMTPAVYAPYDVKVQAINQLGSGPDPQ
SVTLYSGEDYPDTAPVIHGVDVINSTLVKVTWSTVPKDRVHGRLKGYQINWWKTKSLL
DGRTHPKEVNILRFSGQRNSGMVPSLDAFSEFHLTVLAYNSKGAGPESEPYIFQTPEG
VPEQPTFLKVIKVDKDTATLSWGLPKKLNGNLTGYLLQYQIINDTYEIGELNDINITT
PSKPSWHLSNLNATTKYKFYLRACTSQGCGKPITEESSTLGEGSKGIGKISGVNLTQK
THPVEVFEPGAEHIVRLMTKNWGDNDSIFQDVIETRGREYAGLYDDISTQGWFIGLMC
AIALLTLLLLTVCFVKRNRGGKYSVKEKEDLHPDPEIQSVKDETFGEYSDSDEKPLKG
SLRSLNRDMQPTESADSLVEYGEGDHGLFSEDGSFIGAYAGSKEKGSVESNGSSTATF
PLRA"
BASE COUNT 1196 a 760 c 822 g 923 t
ORIGIN
1 tcttaccggg ttgtcttctt cctgaagagc aatggagccg cttttacttg gaagaggact
61 aatcgtatat ctaatgttcc tcctgttaaa attctcaaaa gcaattgaaa taccatcttc
121 agttcaacag gttccaacaa tcataaaaca gtcaaaagtc caagttgcct ttcccttcga
181 tgagtatttt caaattgaat gtgaagctaa aggaaatcca gaaccaacat tttcgtggac
241 taaggatggc aacccttttt atttcactga ccatcggata attccatcga acaattcagg
301 aacattcagg atcccaaacg aggggcacat atctcacttt caagggaaat accgctgctt
361 tgcttcaaat aaactgggaa tcgctatgtc agaagaaata gaatttatag ttccaagtgt
421 tccaaaattc ccaaaagaaa aaattgaccc tcttgaagtg gaggagggag atccaattgt
481 cctcccatgc aatcctccca aaggcctccc acctttacac atttattgga tgaatattga
541 attagaacac atcgaacaag atgaaagagt atacatgagc caaaagggag atctatactt
601 cgcaaacgtg gaagaaaagg acagtcgcaa tgactactgt tgctttgctg catttccaag
661 attaaggact attgtacaga aaatgccaat gaaactaaca gttaacagtt caaattccat
721 caagcaaaga aaacccaaac tgctgttgcc tcccactgag agtggcagtg agtcttcaat
781 taccatcctc aaaggggaaa tcttgctgct tgagtgtttt gctgaaggct tgccaactcc
841 acaggttgat tggaacaaaa ttggtggtga cttaccaaag gggagagaag caaaagaaaa
901 ttatggcaag actttgaaga tagagaatgt ctcctaccag gacaaaggaa attatcgctg
961 cacagccagc aatttcttgg gaacagccac tcacgatttt cacgttatag tagaagagcc
1021 tcctcgctgg acaaagaagc ctcagagtgc tgtgtatagc accggaagca atggcatctt
1081 gttatgtgag gctgaaggag aacctcaacc cacaatcaag tggagagtca atggctcccc
1141 agttgacaat catccatttg ctggtgatgt tgtcttcccc agggaaatca gttttaccaa
1201 ccttcaacca aatcatactg ctgtgtacca gtgtgaagcc tcaaatgtcc atggaactat
1261 ccttgccaat gccaatattg atgttgtgga tgtccgtcca ttgatacaaa ccaaagatgg
1321 agaaaattac gctacagtgg ttgggtacag tgctttctta cattgcgagt tctttgcttc
1381 acctgaggca gtcgtgtcct ggcagaaggt ggaagaagtg aaacccctgg agggcaggcg
1441 gtatcatatc tatgaaaatg gcacattgca gatcaacaga accaccgaag aagatgctgg
1501 gtcttactca tgttgggtag aaaatgctat aggaaaaact gcagtcacag ccaatttgga
1561 tattagaaat gctacaaaac ttagagtttc tcctaagaat cctcgtatcc ccaaattgca
1621 tatgcttgaa ttacattgtg aaagcaaatg tgactcacat ttgaaacaca gtttgaagtt
1681 gtcctggagt aaagatggag aagcctttga aattaatggc acagaagatg gcaggataat
1741 tattgatgga gctaatttga ccatatctaa tgtaacttta gaggaccaag gtatttactg
1801 ctgttcagct catactgctc tagacagtgc tgccgatata actcaagtaa ctgttcttga
1861 tgttccggat ccaccagaaa accttcactt gtctgaaaga cagaacagga gtgttcggct
1921 gacctgggaa gctggagctg accacaacag caatattagc gagtatattg ttgaatttga
1981 aggaaacaaa gaagagcctg gaaggtggga ggaactgacc agagtccaag gaaagaaaac
2041 cacagttatc ttacctttgg ctccatttgt gagataccag ttcagggtca tagccgtgaa
2101 cgaagtaggg agaagtcagc ctagccagcc gtcagaccat catgaaacac caccagcagc
2161 tccagatagg aatccacaaa acataagggt tcaagcctct caacccaagg aaatgattat
2221 aaagtgggag cctttgaaat ccatggagca gaatggacca ggcctagagt acagagtgac
2281 ctggaagcca cagggagccc cagtggagtg ggaagaagaa acagtcacaa accacacatt
2341 gcgggtgatg acgcctgctg tctatgcccc ttatgatgtc aaggtccagg ctatcaatca
2401 actaggatct gggcctgacc ctcagtcagt gactctctat tctggagaag actatcctga
2461 tacagctcca gtgatccatg gggtggacgt tataaacagt acattagtta aagttacctg
2521 gtcaacagtt ccaaaggaca gagtacatgg acgtctgaaa ggctatcaga taaattggtg
2581 gaaaacaaaa agtctgttgg atggaagaac acatcccaaa gaagtgaaca ttctaagatt
2641 ttcaggacaa agaaactctg gaatggttcc ttccttagat gcctttagtg aatttcattt
2701 aacagtctta gcctataact ctaaaggagc tggtcctgaa agtgagcctt atatatttca
2761 aacaccagaa ggagtacctg aacagccaac ttttctaaag gtcatcaaag ttgataaaga
2821 cactgccact ttatcttggg gactacctaa gaaattaaat ggaaacttaa ctggctatct
2881 tttgcaatat cagataataa atgacaccta cgagattgga gaattaaatg atattaacat
2941 tacaactcca tcaaagccca gctggcacct ctcaaacctg aatgcaacta ccaagtacaa
3001 attctacttg agggcttgca cttcacaggg ctgtggaaaa ccgatcacgg aggaaagctc
3061 caccttagga gaagggagta aaggtatcgg gaagatatca ggagtaaatc ttactcaaaa
3121 gactcaccca gtagaggtat ttgagccggg agctgaacat atagttcgcc taatgactaa
3181 gaattggggc gataacgata gcatttttca agatgtaatt gagacaagag ggagagaata
3241 tgctggttta tatgatgaca tctccactca aggctggttt attggactga tgtgtgcgat
3301 tgctcttctc acactactat tattaactgt ttgctttgtg aagaggaata gaggtggaaa
3361 gtactcagtt aaagaaaagg aagatttgca tccagaccca gaaattcagt cagtaaaaga
3421 tgaaaccttt ggtgaataca gtgacagtga tgaaaagcct ctcaaaggaa gccttcggtc
3481 ccttaatagg gatatgcagc ctactgaaag tgctgacagc ttagtcgaat acggagaggg
3541 agaccatggt ctcttcagtg aagatggatc atttattggt gcctacgctg gatctaagga
3601 gaagggatct gttgaaagca atggaagttc tacagcaact tttccccttc gggcataaac
3661 acaacatatg taagcaacgc tactggttca ccccaacctt c
//