LOCUS BC104457 936 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens outer dense fiber of sperm tails 1, mRNA (cDNA clone
MGC:129929 IMAGE:40030627), complete cds.
ACCESSION BC104457
VERSION BC104457.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 936)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 936)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 13 Row: n Column: 20.
FEATURES Location/Qualifiers
source 1..936
/db_xref="H-InvDB:HIT000337751"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:129929 IMAGE:40030627"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: CGTACCAC sequenced from the reverse primer"
gene 1..936
/gene="ODF1"
/gene_synonym="HSPB10"
/gene_synonym="ODF"
/gene_synonym="ODF2"
/gene_synonym="ODF27"
/gene_synonym="ODFP"
/gene_synonym="ODFPG"
/gene_synonym="ODFPGA"
/gene_synonym="ODFPGB"
/gene_synonym="RT7"
/gene_synonym="SODF"
/db_xref="GeneID:4956"
/db_xref="HGNC:HGNC:8113"
/db_xref="MIM:182878"
CDS 80..832
/gene="ODF1"
/gene_synonym="HSPB10"
/gene_synonym="ODF"
/gene_synonym="ODF2"
/gene_synonym="ODF27"
/gene_synonym="ODFP"
/gene_synonym="ODFPG"
/gene_synonym="ODFPGA"
/gene_synonym="ODFPGB"
/gene_synonym="RT7"
/gene_synonym="SODF"
/codon_start=1
/product="outer dense fiber of sperm tails 1"
/protein_id="AAI04458.1"
/db_xref="GeneID:4956"
/db_xref="HGNC:HGNC:8113"
/db_xref="MIM:182878"
/translation="MAALSCLLDSVRRDIKKVDRELRQLRCIDEFSTRCLCDLYMHPY
CCCDLHPYPYCLCYSKRSRSCGLCDLYPCCLCDYKLYCLRPSLRSLERKAIRAIEDEK
RELAKLRRTTNRILASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDC
LGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSCVKIESPCYPCTSPCSPCSPCNPC
NPCSPCNPCSPYDPCNPCYPCGSRFSCRKMIL"
BASE COUNT 237 a 232 c 230 g 237 t
ORIGIN
1 ctgagaaggg cttagaacaa attttttccc ggagtgccat ttcccaaagg tactcacaga
61 acaatcaggt gtgaccataa tggctgcact gagttgtctc ttggacagtg tcagaaggga
121 cataaagaag gtggacagag aactaaggca actgagatgc atcgacgaat ttagcacacg
181 gtgcctgtgc gacttgtata tgcaccccta ttgctgctgt gacttgcacc catatccgta
241 ctgcttgtgc tattccaagc gatcacgctc ttgcggcctg tgtgatctct acccatgttg
301 cctgtgtgat tataagcttt actgtctgcg accatctctc agaagtttgg agaggaaagc
361 catcagagcc atagaagatg agaagcgaga gcttgccaaa ctgagaagaa caacaaatag
421 aattctggct tcctcctgct gtagcagtaa cattttagga tcggtgaatg tatgcggttt
481 tgaacccgat caagtcaaag ttcgagtgaa ggatggaaag gtatgtgtgt cggctgagcg
541 ggagaacagg tacgactgcc ttggatcgaa aaagtacagc tacatgaaca tctgcaaaga
601 gttcagcttg ccgccctgtg tggatgagaa ggatgtaaca tactcctatg ggctcggcag
661 ctgtgtcaag atcgagtctc cttgctaccc ttgcacttct ccttgcagcc cgtgcagccc
721 gtgcaacccc tgcaacccct gcagcccctg caacccgtgc agcccatatg atccttgcaa
781 cccgtgttat ccctgtggaa gccgattttc ctgtaggaag atgattttgt aaagtgcgca
841 taggaaccca ttacttaata gaagtcagtt actccagcca ggcagctctc ccaatgtttc
901 tcctctcctt cccatggccc ctgttgttga agtacg
//