LOCUS BC103938 2936 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens LIM homeobox 6, mRNA (cDNA clone MGC:119545 IMAGE:40008211), complete cds. ACCESSION BC103938 VERSION BC103938.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2936) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2936) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 7 Row: f Column: 12. FEATURES Location/Qualifiers source 1..2936 /db_xref="H-InvDB:HIT000337490" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119545 IMAGE:40008211" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: CACA sequenced from the forward primer" gene 1..2936 /gene="LHX6" /gene_synonym="LHX6.1" /db_xref="GeneID:26468" /db_xref="HGNC:HGNC:21735" /db_xref="MIM:608215" CDS 19..1107 /gene="LHX6" /gene_synonym="LHX6.1" /codon_start=1 /product="LIM homeobox 6" /protein_id="AAI03939.1" /db_xref="GeneID:26468" /db_xref="HGNC:HGNC:21735" /db_xref="MIM:608215" /translation="MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASP CTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLAFACFS CKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPA KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH TPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLP YTAPPVHLKADMDGPLSNRGEKVILFQY" BASE COUNT 679 a 869 c 766 g 622 t ORIGIN 1 cccgccaccg accaggtgat ggcccagcca gggtccggct gcaaagcgac cacccgctgt 61 cttgaaggga ccgcgccgcc cgccatggct cagtctgacg ccgaggccct ggcaggagct 121 ctggacaagg acgagggtca ggcctcccca tgtacgccca gcacgccatc tgtctgctca 181 ccgccctctg ccgcctcctc cgtgccgtct gcaggcaaga acatctgctc cagctgcggc 241 ctcgagatcc tggaccgata tctgctcaag gtcaacaacc tcatctggca cgtgcggtgc 301 ctcgagtgct ccgtgtgtcg cacgtcgctg aggcagcaga acagctgcta catcaagaac 361 aaggagatct tctgcaagat ggactacttc agccgattcg ggaccaagtg tgcccggtgc 421 ggccgacaga tctacgccag cgactgggtg cggagagctc gcggcaacgc ctaccacctg 481 gccttcgcct gcttctcgtg caagcgccag ctgtccactg gtgaggagtt cggcctggtc 541 gaggagaagg tgctctgccg catccactac gacaccatga ttgagaacct caagagggcc 601 gccgagaacg ggaacggcct cacgttggag ggggcagtgc cctcggaaca ggacagtcaa 661 cccaagccgg ccaagcgcgc gcggacgtcc ttcaccgcgg aacagctgca ggttatgcag 721 gcgcagttcg cgcaggacaa caaccccgac gctcagacgc tgcagaagct ggcggacatg 781 acgggcctca gccggagagt catccaggtg tggtttcaaa actgccgggc gcgtcataaa 841 aagcacacgc cgcaacaccc agtgccgccc tcgggggcgc ccccgtcccg ccttccctcc 901 gccctgtccg acgacatcca ctacaccccg ttcagcagcc ccgagcgggc gcgcatggtc 961 accctgcacg gctacattga gagtcaggta cagtgcgggc aggtgcactg ccggctgcct 1021 tacaccgcac cccccgtcca cctcaaagcc gatatggatg ggccgctctc caaccggggt 1081 gagaaggtca tcctttttca gtactaacgc tgccggcact tccgcatctg cccgtgggcg 1141 ccccacagct gcccctcagc cgctgagatc cagtgtccaa gctgcggcca ggagtccacc 1201 cacctccgca tccacccccg tccgccatcc tgcccaccac caggtcggtt cccgaggcct 1261 ggcctttccc tctcctgctg agaaccagaa cccaccagga gcaccacaga gtcctcctct 1321 tggaaggcag aactccctga aatctggaat cagggtggaa acagcctgtt tttcccattt 1381 aaacaggagt cctcttcaac ttcagctgat tacaataaca aaaggcggaa ttgaattgtg 1441 cgatgccaac ggccttctca tttacaggtt tttttccccc acattggcct ttatttacta 1501 cttccttgga accatctctg aattctgaat agctgacaac ccccaatgtt atccactctg 1561 ttgcttttgt ctggaaaact ctacagtgtt tgtgggatgt ccccaaagga aagctatgtt 1621 ctaattttat catttccatc tgtctggtta tgtcaagtta attcagaaag agaagagaca 1681 gtgaccaacc ctgagaggcc taatagggca gagatggagg cctgcccaga ctaggaggca 1741 gcggggatag acagggaatg gggagaagaa agacccccat tggtttggaa atcaaggaga 1801 gggcggtgac atattggacc agaagaggca ctagccattt taaggagagg aaagagaaaa 1861 ctctggggtc agggagagac cctaccccca cctaattatc cagcatatat gtaagaaaca 1921 tagcagcgat ggtattcgat ctgtgccatg actcttctga atgtttggac aggttagagt 1981 tggggacccc tgttggccac ttgttgacct ctcatagtgg tgcttgggcc aggtcttctc 2041 aatggaaggg gaatccctta taggggagag ggaacagagc ccagtgaaat ggcagtcaga 2101 atgttaaccc tggatccatc tctaagtaga gagagggtgc ccattgccta ggtgagtgtg 2161 ccaagctcag gattccaact ggtgcctctg agcttcccaa tcaatacttc ctggagccag 2221 ccccacccac ccctgagaac agaggtcaga cacagctgcg taacatccat cctgctacaa 2281 ctcttccacc ccaaacaaaa gggctcaggc tacacacgac catgatttat gttttcaggg 2341 gatgcccatt tgtcccaagc ttatcctgta attctagaat tacctggtgt cctgatgcat 2401 tttccactag aggttgctaa tcagcatgtt ttagcccaag tccaccttcc tgctgtggtt 2461 aacctgttat gttgcttttg gaaggagact ctaagacagg gaaagcaagt tcatggtaca 2521 tacgcagcca ttgtctctgt ttttacccat ggcagacatt gctaatcaat ggcagctcta 2581 tttcactgag tctggataag gtttcagagt tcaaatgctt gacgttggca cttaacatga 2641 aagcctatag gtcattcttg ctctgggatc tacaggcagg gtaggcacag gtgcagccta 2701 agaagggaac ctgcttcctc tcccttccaa agacagtgac agctgactga gggcaaagag 2761 caggcaccac tcagaacgtg gtgagtacag ctcagctcag cactcagtca gtggtaactt 2821 gtgcccagcc ctgtgctagg cgctgacatt aacaggagca accagggccc aattcctggc 2881 cttggagctc aaatctttcc tttgattttt gctcctgatc atcaaggccc cagtgg //