LOCUS BC103937 2939 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens LIM homeobox 6, mRNA (cDNA clone MGC:119544
IMAGE:40008210), complete cds.
ACCESSION BC103937
VERSION BC103937.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2939)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2939)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: f Column: 11.
FEATURES Location/Qualifiers
source 1..2939
/db_xref="H-InvDB:HIT000337489"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119544 IMAGE:40008210"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: CGACCACA sequenced from
the forward primer"
gene 1..2939
/gene="LHX6"
/gene_synonym="LHX6.1"
/db_xref="GeneID:26468"
/db_xref="HGNC:HGNC:21735"
/db_xref="MIM:608215"
CDS 19..1110
/gene="LHX6"
/gene_synonym="LHX6.1"
/codon_start=1
/product="LIM homeobox 6"
/protein_id="AAI03938.1"
/db_xref="GeneID:26468"
/db_xref="HGNC:HGNC:21735"
/db_xref="MIM:608215"
/translation="MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASP
CTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT
SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF
SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKP
AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK
HTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRL
PYTAPPVHLKADMDGPLSNRGEKVILFQY"
BASE COUNT 679 a 870 c 767 g 623 t
ORIGIN
1 cccgccaccg accaggtgat ggcccagcca gggtccggct gcaaagcgac cacccgctgt
61 cttgaaggga ccgcgccgcc cgccatggct cagtctgacg ccgaggccct ggcaggagct
121 ctggacaagg acgagggtca ggcctcccca tgtacgccca gcacgccatc tgtctgctca
181 ccgccctctg ccgcctcctc cgtgccgtct gcaggcaaga acatctgctc cagctgcggc
241 ctcgagatcc tggaccgata tctgctcaag gtcaacaacc tcatctggca cgtgcggtgc
301 ctcgagtgct ccgtgtgtcg cacgtcgctg aggcagcaga acagctgcta catcaagaac
361 aaggagatct tctgcaagat ggactacttc agccgattcg ggaccaagtg tgcccggtgc
421 ggccgacaga tctacgccag cgactgggtg cggagagctc gcggcaacgc ctaccacctg
481 gcctgcttcg cctgcttctc gtgcaagcgc cagctgtcca ctggtgagga gttcggcctg
541 gtcgaggaga aggtgctctg ccgcatccac tacgacacca tgattgagaa cctcaagagg
601 gccgccgaga acgggaacgg cctcacgttg gagggggcag tgccctcgga acaggacagt
661 caacccaagc cggccaagcg cgcgcggacg tccttcaccg cggaacagct gcaggttatg
721 caggcgcagt tcgcgcagga caacaacccc gacgctcaga cgctgcagaa gctggcggac
781 atgacgggcc tcagccggag agtcatccag gtgtggtttc aaaactgccg ggcgcgtcat
841 aaaaagcaca cgccgcaaca cccagtgccg ccctcggggg cgcccccgtc ccgccttccc
901 tccgccctgt ccgacgacat ccactacacc ccgttcagca gccccgagcg ggcgcgcatg
961 gtcaccctgc acggctacat tgagagtcag gtacagtgcg ggcaggtgca ctgccggctg
1021 ccttacaccg caccccccgt ccacctcaaa gccgatatgg atgggccgct ctccaaccgg
1081 ggtgagaagg tcatcctttt tcagtactaa cgctgccggc acttccgcat ctgcccgtgg
1141 gcgccccaca gctgcccctc agccgctgag atccagtgtc caagctgcgg ccaggagtcc
1201 acccacctcc gcatccaccc ccgtccgcca tcctgcccac caccaggtcg gttcccgagg
1261 cctggccttt ccctctcctg ctgagaacca gaacccacca ggagcaccac agagtcctcc
1321 tcttggaagg cagaactccc tgaaatctgg aatcagggtg gaaacagcct gtttttccca
1381 tttaaacagg agtcctcttc aacttcagct gattacaata acaaaaggcg gaattgaatt
1441 gtgcgatgcc aacggccttc tcatttacag gtttttttcc cccacattgg cctttattta
1501 ctacttcctt ggaaccatct ctgaattctg aatagctgac aacccccaat gttatccact
1561 ctgttgcttt tgtctggaaa actctacagt gtttgtggga tgtccccaaa ggaaagctat
1621 gttctaattt tatcatttcc atctgtctgg ttatgtcaag ttaattcaga aagagaagag
1681 acagtgacca accctgagaa gcctaatagg gcagagatgg aggcctgccc agactaggag
1741 gcagcgggga tagacaggga atggggagaa gaaagacccc cattggtttg gaaatcaagg
1801 agagggcggt gacatattgg accagaagag gcactagcca ttttaaggag aggaaagaga
1861 aaactctggg gtcagggaga gaccctaccc ccacctaatt atccagcata tatgtaagaa
1921 acatagcagc gatggtattc gatctgtgcc atgactcttc tgaatgtttg gacaggttag
1981 agttggggac ccctgttggc cacttgttga cctctcatag tggtgcttgg gccaggtctt
2041 ctcaatggaa ggggaatccc ttatagggga gagggaacag agcccagtga aatggcagtc
2101 agaatgttaa ccctggatcc atctctaagt agagagaggg tgcccattgc ctaggtgagt
2161 gtgccaagct caggattcca actggtgcct ctgagcttcc caatcaatac ttcctggagc
2221 cagccccacc cacccctgag aacagaggtc agacacagct gcgtaacatc catcctgcta
2281 caactcttcc accccaaaca aaagggctca ggctacacac gaccatgatt tatgttttca
2341 ggggatgccc atttgtccca agcttatcct gtaattctag aattacctgg tgtcctgatg
2401 cattttccac tagaggttgc taatcagcat gttttagccc aagtccgcct tcctgctgtg
2461 gttaacctgt tatgttgctt ttggaaggag actctaagac agggaaagca agttcatggt
2521 acatacgcag ccattgtctc tgtttttacc catggcagac attgctaatc aatggcagct
2581 ctatttcact gagtctggat aaggtttcag agttcaaatg cttgacgttg gcacttaaca
2641 tgaaagccta taggtcattc ttgctctggg atctacaggc agggtaggca caggtgcagc
2701 ctaagaaggg aacctgcttc ctctcccttc caaagacagt gacagctgac tgagggcaaa
2761 gagcaggcac cactcagaac gtggtgagta cagctcagct cagcactcag tcagtggtaa
2821 cttgtgccca gccctgtgct aggcgctgac attaacagga gcaaccaggg cccaattcct
2881 ggccttggag ctcaaatctt tcctttgatt tttgctcctg atcatcaagg ccccagtgg
//