LOCUS BC103936 2835 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens LIM homeobox 6, mRNA (cDNA clone MGC:119542
IMAGE:40008208), complete cds.
ACCESSION BC103936
VERSION BC103936.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2835)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2835)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: e Column: 11.
FEATURES Location/Qualifiers
source 1..2835
/db_xref="H-InvDB:HIT000337488"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119542 IMAGE:40008208"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: TGTACACT sequenced from the reverse primer"
gene 1..2835
/gene="LHX6"
/gene_synonym="LHX6.1"
/db_xref="GeneID:26468"
/db_xref="HGNC:HGNC:21735"
/db_xref="MIM:608215"
CDS 19..1065
/gene="LHX6"
/gene_synonym="LHX6.1"
/codon_start=1
/product="LIM homeobox 6"
/protein_id="AAI03937.1"
/db_xref="GeneID:26468"
/db_xref="HGNC:HGNC:21735"
/db_xref="MIM:608215"
/translation="MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASP
CTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT
SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF
SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKP
AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK
HTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTLPAL
PHLPVGAPQLPLSR"
BASE COUNT 658 a 834 c 735 g 608 t
ORIGIN
1 cccgccaccg accaggtgat ggcccagcca gggtccggct gcaaagcgac cacccgctgt
61 cttgaaggga ccgcgccgcc cgccatggct cagtctgacg ccgaggccct ggcaggagct
121 ctggacaagg acgagggtca ggcctcccca tgtacgccca gcacgccatc tgtctgctca
181 ccgccctctg ccgcctcctc cgtgccgtct gcaggcaaga acatctgctc cagctgcggc
241 ctcgagatcc tggaccgata tctgctcaag gtcaacaacc tcatctggca cgtgcggtgc
301 ctcgagtgct ccgtgtgtcg cacgtcgctg aggcagcaga acagctgcta catcaagaac
361 aaggagatct tctgcaagat ggactacttc agccgattcg ggaccaagtg tgcccggtgc
421 ggccgacaga tctacgccag cgactgggtg cggagagctc gcggcaacgc ctaccacctg
481 gcctgcttcg cctgcttctc gtgcaagcgc cagctgtcca ctggtgagga gttcggcctg
541 gtcgaggaga aggtgctctg ccgcatccac tacgacacca tgattgagaa cctcaagagg
601 gccgccgaga acgggaacgg cctcacgttg gagggggcag tgccctcgga acaggacagt
661 caacccaagc cggccaagcg cgcgcggacg tccttcaccg cggaacagct gcaggttatg
721 caggcgcagt tcgcgcagga caacaacccc gacgctcaga cgctgcagaa gctggcggac
781 atgacgggcc tcagccggag agtcatccag gtgtggtttc aaaactgccg ggcgcgtcat
841 aaaaagcaca cgccgcaaca cccagtgccg ccctcggggg cgcccccgtc ccgccttccc
901 tccgccctgt ccgacgacat ccactacacc ccgttcagca gccccgagcg ggcgcgcatg
961 gtcaccctgc acggctacat tgagagtcat cctttttcag tactaacgct gccggcactt
1021 ccgcatctgc ccgtgggcgc cccacagctg cccctcagcc gctgagatcc agtgtccaag
1081 ctgcggccag gagtccaccc acctccgcat ccacccccgt ccgccatcct gcccaccacc
1141 aggtcggttc ccgaggcctg gcctttccct ctcctgctga gaaccagaac ccaccaggag
1201 caccacagag tcctcctctt ggaaggcaga actccctgaa atctggaatc agggtggaaa
1261 cagcctgttt ttcccattta aacaggagtc ctcttcaact tcagctgatt acaataacaa
1321 aaggcggaat tgaattgtgc gatgccaacg gccttctcat ttacaggttt ttttccccca
1381 cattggcctt tatttactac ttccttggaa ccatctctga attctgaata gctgacaacc
1441 cccaatgtta tccactctgt tgcttttgtc tggaaaactc tacagtgttt gtgggatgtc
1501 cccaaaggta agctatgttc taattttatc atttccatct gtctggttat gtcaagttaa
1561 ttcagaaaga gaagagacag tgaccaaccc tgagaggcct aatagggcag agatggaggc
1621 ctgcccagac taggaggcag cggggataga cagggaatgg ggagaagaaa gacccccatt
1681 ggtttggaaa tcaaggagag ggcggtgaca tattggacca gaagaggcac tagccatttt
1741 aaggagagga aagagaaaac tctggggtca gggagagacc ctacccccac ctaattatcc
1801 agcatatatg taagaaacat agcagcgatg gtattcgatc tgtgccatga ctcttctgaa
1861 tgtttggaca ggttagagtt ggggacccct gttggccact tgttgacctc tcatagtggt
1921 gcttgggcca ggtcttctca atggaagggg aatcccttat aggggagagg gaacagagcc
1981 cagtgaaatg gcagtcagaa tgttaaccct ggatccatct ctaagtagag agagggtgcc
2041 cattgcctag gtgagtgtgc caagctcagg attccaactg gtgcctctga gcttcccaat
2101 caatacttcc tggagccagc cccacccacc cctgagaaca gaggtcagac acagctgcgt
2161 aacatccatc ctgctacaac tcttccaccc caaacaaaag ggctcaggct acacacgacc
2221 atgatttatg ttttcagggg atgcccattt gtcccaagct tatcctgtaa ttctagaatt
2281 acctggtgtc ctgatgcatt ttccactaga ggttgctaat cagcatgttt tagcccaagt
2341 ccaccttcct gctgtggtta acctgttatg ttgcttttgg aaggagactc taagacaggg
2401 aaagcaagtt catggtacat acgcagccat tgtctctgtt tttacccatg gcagacattg
2461 ctaatcaatg gcagctctat ttcactgagt ctggataagg tttcagagtt caaatgcttg
2521 acgttggcac ttaacatgaa agcctatagg tcattcttgc tctgggatct acaggcaggg
2581 taggcacagg tgcagcctaa gaagggaacc tgcttcctct cccttccaaa gacagtgaca
2641 gctgactgag ggcaaagagc aggcaccact cagaacgtgg tgagtacagc tcagctcagc
2701 actcagtcag tggtaacttg tgcccagccc tgtgctaggc gctgacatta acaggagcaa
2761 ccagggccca attcctggcc ttggagctca aatctttcct ttgatttttg ctcctgatca
2821 tcaaggcccc agtgg
//