LOCUS BC103927 2433 bp mRNA linear HUM 04-OCT-2006 DEFINITION Homo sapiens protocadherin gamma subfamily B, 1, mRNA (cDNA clone MGC:119467 IMAGE:40007756), complete cds. ACCESSION BC103927 VERSION BC103927.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2433) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2433) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAM Plate: 5 Row: i Column: 2. FEATURES Location/Qualifiers source 1..2433 /db_xref="H-InvDB:HIT000337479" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:119467 IMAGE:40007756" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_283" /note="Vector: pCR-Blunt II-TOPO with reversed insert; Clone identification sequence tag: TATCCTAA sequenced from the forward primer" gene 1..2433 /gene="PCDHGB1" /gene_synonym="PCDH-GAMMA-B1" /db_xref="GeneID:56104" /db_xref="HGNC:HGNC:8708" /db_xref="MIM:606299" CDS 1..2433 /gene="PCDHGB1" /gene_synonym="PCDH-GAMMA-B1" /codon_start=1 /product="protocadherin gamma subfamily B, 1" /protein_id="AAI03928.1" /db_xref="GeneID:56104" /db_xref="HGNC:HGNC:8708" /db_xref="MIM:606299" /translation="MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSR VGKLAKDLGLSVRELPTRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALE FETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVE GNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPP LSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITY AFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIV DENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLES TSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQ ASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSYVSVSPQSG VVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPD GSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRT ARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQT ELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPGVPPNHS EGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDP SLSSHVSFCKSS" BASE COUNT 580 a 671 c 635 g 547 t ORIGIN 1 atgcagagag ccagagaagc cgaaatgatg aaaagtcagg tactgtttcc cttcctgctg 61 tctttgttct gcggggccat ctcccagcag atccgataca cgattccaga ggagctagcc 121 aacggctcac gggtggggaa acttgccaag gatctggggc tcagtgtccg ggagttgcca 181 actcgaaaac tgcgggttag tgcagaggat tatttcaacg ttagtttgga gagcggggat 241 ttgttagtga acggtaggat agatcgagag aagatttgcg gaaggaaact tgagtgtgca 301 ctagaattcg aaacggtcgc tgaaaaccca atgaatgttt tccacgtggt tgttgtaatc 361 caagatatta atgacaatgc accacgtttc gttgcaaaag gcattgactt agaaatttgt 421 gagtcagcct tacccggggt aaaattctct ctggattctg ctcaagatgc agatgtggaa 481 ggcaattcac tgaagttata caccatcaac cccaatcaat acttctctct gtcaacgaag 541 gaaagtcctg atggaagtaa atatccggta ttactgctgg aaaaacctct agacagggaa 601 catcagagct ctcatcgctt aatcctgact gccatggatg gcggggaccc gcctctaagc 661 ggcaccaccc atatctggat ccgagttacg gatgccaatg ataatgctcc cgtgtttagc 721 caggaggtat acagggttag cctccaagaa aacgtaccgt ggggaacctc cgtgctgcgg 781 gtgatggcca cagaccagga tgagggcatt aatgcagaga tcacctatgc cttcctcaat 841 tccccaataa gtaccagcct cttcaatctc aatccaaata ctggcgacat cacaaccaat 901 ggcacattgg attttgaaga gacaagtaga tatgtgttga gtgtggaagc taaggatgga 961 ggagtacaca cagctcactg taatgttcaa atagaaattg ttgacgagaa tgacaatgcc 1021 ccagaggtga cattcatgtc cttctctaac cagattccag aggattcaga ccttggaact 1081 gtaatagccc tcataaaagt gcgagacaag gattctgggc aaaatggcat ggtgacatgc 1141 tatactcagg aagaagttcc tttcaaatta gaatccacct cgaagaatta ttacaagctg 1201 gtgattgctg gagccctaaa ccgggagcag acagcagact acaacgtcac aatcatagcc 1261 accgacaagg gcaaaccagc cctttcctcc aggacaagca tcaccctgca catctccgac 1321 atcaacgaca atgcacctgt tttccatcag gcctcctatg tggtccacgt gtctgagaac 1381 aacccacctg gcgcctccat tgcacaagta agcgcctccg acccggattt gggacccaac 1441 ggcagagtct cctactctat tctggccagt gacctggagc cgcgggagct gttgtcctac 1501 gtgtccgtga gcccgcagag cggggtggtg ttcgcgcagc gcgccttcga ccacgagcag 1561 ctgcgcgcct tcgagctcac actgcaggcc agggaccagg gctcccccgc gctcagcgcc 1621 aacgtgagcc tgcgcgtgtt ggtgggcgac ctcaatgaca atgcgccacg ggtgctgtac 1681 cccgcgctgg ggcctgatgg ctccgccctc ttcgatatgg tgccacgcgc cgcagagccc 1741 ggctacctgg tgaccaaggt ggtggcggtg gacgcagact caggacacaa cgcttggctg 1801 tcctaccacg tgctgcaggc cagcgagccc gggctcttca gcctggggtt gcgcacgggt 1861 gaggtgcgca cagcgcgtgc cttgggcgac agggacgcgg cccgccagcg cctgctggtc 1921 gctgtgcgtg atggaggaca gccgccactc tccgccaccg ccacgctgca cctaatcttc 1981 gcggatagcc tgcaagaggt attgccagac ctcagcgacc gccctgagcc ctctgacccc 2041 cagacggaac tgcagtttta cctggttgtg gccttggcct tgatctcagt gctctttctc 2101 ctcgcggtga ttctagcgat cgccctgcgc ctgcgacgtt cctccagcct cgacactgag 2161 ggctgctttc aaaccggtct ctgctccaag tctgggcccg gggttcctcc caaccacagc 2221 gaggggactt tgccctattc ctacaatcta tgtattgcct ctcattctgc aaagacagag 2281 tttaattctc tcaacctgac accggaaatg gctccccctc aggatctgct gtgtgatgat 2341 ccttctatgg ttgtatgtgc cagtaatgaa gatcacaaaa tcgcttatga cccttctttg 2401 tcttcgcacg tgagtttctg caaatctagt taa //