LOCUS       BC103927                2433 bp    mRNA    linear   HUM 04-OCT-2006
DEFINITION  Homo sapiens protocadherin gamma subfamily B, 1, mRNA (cDNA clone
            MGC:119467 IMAGE:40007756), complete cds.
ACCESSION   BC103927
VERSION     BC103927.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2433)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2005) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Baylor Human Genome Sequencing Center
            cDNA Library Preparation: Baylor Human Genome Sequencing Center
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAM Plate: 5 Row: i Column: 2.
FEATURES             Location/Qualifiers
     source          1..2433
                     /db_xref="H-InvDB:HIT000337479"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:119467 IMAGE:40007756"
                     /tissue_type="PCR rescued clones"
                     /clone_lib="NIH_MGC_283"
                     /note="Vector: pCR-Blunt II-TOPO with reversed insert;
                     Clone identification sequence tag: TATCCTAA sequenced from
                     the forward primer"
     gene            1..2433
                     /gene="PCDHGB1"
                     /gene_synonym="PCDH-GAMMA-B1"
                     /db_xref="GeneID:56104"
                     /db_xref="HGNC:HGNC:8708"
                     /db_xref="MIM:606299"
     CDS             1..2433
                     /gene="PCDHGB1"
                     /gene_synonym="PCDH-GAMMA-B1"
                     /codon_start=1
                     /product="protocadherin gamma subfamily B, 1"
                     /protein_id="AAI03928.1"
                     /db_xref="GeneID:56104"
                     /db_xref="HGNC:HGNC:8708"
                     /db_xref="MIM:606299"
                     /translation="MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSR
                     VGKLAKDLGLSVRELPTRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALE
                     FETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVE
                     GNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPP
                     LSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITY
                     AFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIV
                     DENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLES
                     TSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQ
                     ASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSYVSVSPQSG
                     VVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPD
                     GSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRT
                     ARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQT
                     ELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPGVPPNHS
                     EGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDP
                     SLSSHVSFCKSS"
BASE COUNT          580 a          671 c          635 g          547 t
ORIGIN      
        1 atgcagagag ccagagaagc cgaaatgatg aaaagtcagg tactgtttcc cttcctgctg
       61 tctttgttct gcggggccat ctcccagcag atccgataca cgattccaga ggagctagcc
      121 aacggctcac gggtggggaa acttgccaag gatctggggc tcagtgtccg ggagttgcca
      181 actcgaaaac tgcgggttag tgcagaggat tatttcaacg ttagtttgga gagcggggat
      241 ttgttagtga acggtaggat agatcgagag aagatttgcg gaaggaaact tgagtgtgca
      301 ctagaattcg aaacggtcgc tgaaaaccca atgaatgttt tccacgtggt tgttgtaatc
      361 caagatatta atgacaatgc accacgtttc gttgcaaaag gcattgactt agaaatttgt
      421 gagtcagcct tacccggggt aaaattctct ctggattctg ctcaagatgc agatgtggaa
      481 ggcaattcac tgaagttata caccatcaac cccaatcaat acttctctct gtcaacgaag
      541 gaaagtcctg atggaagtaa atatccggta ttactgctgg aaaaacctct agacagggaa
      601 catcagagct ctcatcgctt aatcctgact gccatggatg gcggggaccc gcctctaagc
      661 ggcaccaccc atatctggat ccgagttacg gatgccaatg ataatgctcc cgtgtttagc
      721 caggaggtat acagggttag cctccaagaa aacgtaccgt ggggaacctc cgtgctgcgg
      781 gtgatggcca cagaccagga tgagggcatt aatgcagaga tcacctatgc cttcctcaat
      841 tccccaataa gtaccagcct cttcaatctc aatccaaata ctggcgacat cacaaccaat
      901 ggcacattgg attttgaaga gacaagtaga tatgtgttga gtgtggaagc taaggatgga
      961 ggagtacaca cagctcactg taatgttcaa atagaaattg ttgacgagaa tgacaatgcc
     1021 ccagaggtga cattcatgtc cttctctaac cagattccag aggattcaga ccttggaact
     1081 gtaatagccc tcataaaagt gcgagacaag gattctgggc aaaatggcat ggtgacatgc
     1141 tatactcagg aagaagttcc tttcaaatta gaatccacct cgaagaatta ttacaagctg
     1201 gtgattgctg gagccctaaa ccgggagcag acagcagact acaacgtcac aatcatagcc
     1261 accgacaagg gcaaaccagc cctttcctcc aggacaagca tcaccctgca catctccgac
     1321 atcaacgaca atgcacctgt tttccatcag gcctcctatg tggtccacgt gtctgagaac
     1381 aacccacctg gcgcctccat tgcacaagta agcgcctccg acccggattt gggacccaac
     1441 ggcagagtct cctactctat tctggccagt gacctggagc cgcgggagct gttgtcctac
     1501 gtgtccgtga gcccgcagag cggggtggtg ttcgcgcagc gcgccttcga ccacgagcag
     1561 ctgcgcgcct tcgagctcac actgcaggcc agggaccagg gctcccccgc gctcagcgcc
     1621 aacgtgagcc tgcgcgtgtt ggtgggcgac ctcaatgaca atgcgccacg ggtgctgtac
     1681 cccgcgctgg ggcctgatgg ctccgccctc ttcgatatgg tgccacgcgc cgcagagccc
     1741 ggctacctgg tgaccaaggt ggtggcggtg gacgcagact caggacacaa cgcttggctg
     1801 tcctaccacg tgctgcaggc cagcgagccc gggctcttca gcctggggtt gcgcacgggt
     1861 gaggtgcgca cagcgcgtgc cttgggcgac agggacgcgg cccgccagcg cctgctggtc
     1921 gctgtgcgtg atggaggaca gccgccactc tccgccaccg ccacgctgca cctaatcttc
     1981 gcggatagcc tgcaagaggt attgccagac ctcagcgacc gccctgagcc ctctgacccc
     2041 cagacggaac tgcagtttta cctggttgtg gccttggcct tgatctcagt gctctttctc
     2101 ctcgcggtga ttctagcgat cgccctgcgc ctgcgacgtt cctccagcct cgacactgag
     2161 ggctgctttc aaaccggtct ctgctccaag tctgggcccg gggttcctcc caaccacagc
     2221 gaggggactt tgccctattc ctacaatcta tgtattgcct ctcattctgc aaagacagag
     2281 tttaattctc tcaacctgac accggaaatg gctccccctc aggatctgct gtgtgatgat
     2341 ccttctatgg ttgtatgtgc cagtaatgaa gatcacaaaa tcgcttatga cccttctttg
     2401 tcttcgcacg tgagtttctg caaatctagt taa
//