LOCUS BC103863 805 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens synovial sarcoma, X breakpoint 2, mRNA (cDNA clone
MGC:119055 IMAGE:40003337), complete cds.
ACCESSION BC103863
VERSION BC103863.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 805)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 805)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC103863.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 6 Row: c Column: 22.
FEATURES Location/Qualifiers
source 1..805
/db_xref="H-InvDB:HIT000337415_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:119055 IMAGE:40003337"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: NA"
gene 1..805
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
CDS 139..705
/gene="SSX2"
/gene_synonym="HD21"
/gene_synonym="HOM-MEL-40"
/gene_synonym="MGC15364"
/gene_synonym="MGC3884"
/codon_start=1
/product="synovial sarcoma, X breakpoint 2"
/protein_id="AAI03864.1"
/db_xref="GeneID:6757"
/db_xref="HGNC:HGNC:11336"
/db_xref="MIM:300192"
/translation="MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASE
KIFYVYMKRKYEAMTKLGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFG
RLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRG
EHAWTHRLRERKQLVIYEEISDPEEDDE"
BASE COUNT 236 a 190 c 209 g 170 t
ORIGIN
1 ccgggattgg ctactttaag ttcagagtac gcatgctctg actttctctc tctttcgatt
61 cttccatact cagagtacgc acggtctgat tttctctttg gattcttcca aaatcagagt
121 cagactgctc ccggtgccat gaacggagac gacgcctttg caaggagacc cacggttggt
181 gctcaaatac cagagaagat ccaaaaggcc ttcgatgata ttgccaaata cttctctaag
241 gaagagtggg aaaagatgaa agcctcagag aaaatcttct atgtgtatat gaagagaaag
301 tatgaggcta tgactaaact aggtttcaag gccaccctcc cacctttcat gtgtaataaa
361 cgggccgaag acttccaggg gaatgatttg gataatgacc ctaaccgtgg gaatcaggtt
421 gaacgtcctc agatgacttt cggcaggctc cagggaatct ccccgaagat catgcccaag
481 aagccagcag aggaaggaaa tgattcggag gaagtgccag aagcatctgg cccacaaaat
541 gatgggaaag agctgtgccc cccgggaaaa ccaactacct ctgagaagat tcacgagaga
601 tctggaccca aaagggggga acatgcctgg acccacagac tgcgtgagag aaaacagctg
661 gtgatttatg aagagatcag cgaccctgag gaagatgacg agtaactccc ctcagggata
721 cgacacatgc ccatgatgag aagcagaacg tggtgacctt tcacgaacat gggcatggct
781 gcggacccct cgtcatcagg tgagg
//