LOCUS BC103832 2999 bp mRNA linear HUM 04-OCT-2006
DEFINITION Homo sapiens PR domain containing 1, with ZNF domain, mRNA (cDNA
clone MGC:118922 IMAGE:40001920), complete cds.
ACCESSION BC103832
VERSION BC103832.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2999)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2999)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: a Column: 21.
FEATURES Location/Qualifiers
source 1..2999
/db_xref="H-InvDB:HIT000337384"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:118922 IMAGE:40001920"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: CACTCCA sequenced from the reverse primer"
gene 1..2999
/gene="PRDM1"
/gene_synonym="PRDI-BF1"
/db_xref="GeneID:639"
/db_xref="HGNC:HGNC:9346"
/db_xref="MIM:603423"
CDS 138..2213
/gene="PRDM1"
/gene_synonym="PRDI-BF1"
/codon_start=1
/product="PR domain containing 1, with ZNF domain"
/protein_id="AAI03833.1"
/db_xref="GeneID:639"
/db_xref="HGNC:HGNC:9346"
/db_xref="MIM:603423"
/translation="MEKIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQN
GMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTMMNLTQTQSSLKQPSTEKN
ELCPKNVPKREYSVKEILKLDSNPSKGKDLYRSNISPLTSEKDLDDFRRRGSPEMPFY
PRVVYPIRAPLPEDFLKASLAYGIERPTYITRSPIPSSTTPSPSARSSPDQSLKSSSP
HSSPGNTVSPVGPGSQEHRDSYAYLNASYGTEGLGSYPGYAPLPHLPPAFIPSYNAHY
PKFLLPPYGMNCNGLSAVSSMNGINNFGLFPRLCPVYSNLLGGGSLPHPMLNPTSLPS
SLPSDGARRLLQPEHPREVLVPAPHSAFSFTGAAASMKDKACSPTSGSPTAGTAATAE
HVVQPKATSAAMAAPSSDEAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTF
GQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSS
TSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCSQCHKNYIHLC
SLKVHLKGNCAAAPAPGLPLEDLTRINEEIEKFDISDNADRLEDVEDDISVISVVEKE
ILAVVRKEKEETGLKVSLQRNMGNGLLSSGCSLYESSDLPLMKLPPSNPLPLVPVKVK
QETVEPMDP"
BASE COUNT 829 a 809 c 650 g 711 t
ORIGIN
1 cgcccatttg ccattcactg cagtagcaaa agtagtactc tgtggtgggt taatcggttt
61 gaggcagctc cttaaatgaa catttgtgtt tcatttttct gttattttcc cgaacatgaa
121 aagacgataa aactgaaatg gaaaagatct attccagagg ggagcttcac cacttcattg
181 acggctttaa tgaagagaaa agcaactgga tgcgctatgt gaatccagca cactctcccc
241 gggagcaaaa cctggctgcg tgtcagaacg ggatgaacat ctacttctac accattaagc
301 ccatccctgc caaccaggaa cttcttgtgt ggtattgtcg ggactttgca gaaaggcttc
361 actaccctta tcccggagag ctgacaatga tgaatctcac acaaacacag agcagtctaa
421 agcaaccgag cactgagaaa aatgaactct gcccaaagaa tgtcccaaag agagagtaca
481 gcgtgaaaga aatcctaaaa ttggactcca acccctccaa aggaaaggac ctctaccgtt
541 ctaacatttc acccctcaca tcagaaaagg acctcgatga ctttagaaga cgtgggagcc
601 ccgaaatgcc cttctaccct cgggtcgttt accccatccg ggcccctctg ccagaagact
661 ttttgaaagc ttccctggcc tacgggatcg agagacccac gtacatcact cgctccccca
721 ttccatcctc caccactcca agcccctctg caagaagcag ccccgaccaa agcctcaaga
781 gctccagccc tcacagcagc cctgggaata cggtgtcccc tgtgggcccc ggctctcaag
841 agcaccggga ctcctacgct tacttgaacg cgtcctacgg cacggaaggt ttgggctcct
901 accctggcta cgcacccctg ccccacctcc cgccagcttt catcccctcg tacaacgctc
961 actaccccaa gttcctcttg cccccctacg gcatgaattg taatggcctg agcgctgtga
1021 gcagcatgaa tggcatcaac aactttggcc tcttcccgag gctgtgccct gtctacagca
1081 atctcctcgg tgggggcagc ctgccccacc ccatgctcaa ccccacttct ctcccgagct
1141 cgctgccctc agatggagcc cggaggttgc tccagccgga gcatcccagg gaggtgcttg
1201 tcccggcgcc ccacagtgcc ttctccttta ccggggccgc cgccagcatg aaggacaagg
1261 cctgtagccc cacaagcggg tctcccacgg cgggaacagc cgccacggca gaacatgtgg
1321 tgcagcccaa agctacctca gcagcgatgg cagcccccag cagcgacgaa gccatgaatc
1381 tcattaaaaa caaaagaaac atgaccggct acaagaccct tccctacccg ctgaagaagc
1441 agaacggcaa gatcaagtac gaatgcaacg tttgcgccaa gactttcggc cagctctcca
1501 atctgaaggt ccacctgaga gtgcacagtg gagaacggcc tttcaaatgt cagacttgca
1561 acaagggctt tactcagctc gcccacctgc agaaacacta cctggtacac acgggagaaa
1621 agccacatga atgccaggtc tgccacaaga gatttagcag caccagcaat ctcaagaccc
1681 acctgcgact ccattctgga gagaaaccat accaatgcaa ggtgtgccct gccaagttca
1741 cccagtttgt gcacctgaaa ctgcacaagc gtctgcacac ccgggagcgg ccccacaagt
1801 gctcccagtg ccacaagaac tacatccatc tctgtagcct caaggttcac ctgaaaggga
1861 actgcgctgc ggccccggcg cctgggctgc ccttggaaga tctgacccga atcaatgaag
1921 aaatcgagaa gtttgacatc agtgacaatg ctgaccggct cgaggacgtg gaggatgaca
1981 tcagtgtgat ctctgtagtg gagaaggaaa ttctggccgt ggtcagaaaa gagaaagaag
2041 aaactggcct gaaagtgtct ttgcaaagaa acatggggaa tggactcctc tcctcagggt
2101 gcagccttta tgagtcatca gatctacccc tcatgaagtt gcctcccagc aacccactac
2161 ctctggtacc tgtaaaggtc aaacaagaaa cagttgaacc aatggatcct taagattttc
2221 agaaaacact tattttgttt cttaagttat gacttggtga gtcagggtgc ctgtaggaag
2281 tggcttgtac ataatcccag ctctgcaaag ctctctcgac agcaaatggt ttcccctcac
2341 ctctggaatt aaagaaggaa ctccaaagtt actgaaatct cagggcatga acaaggcaaa
2401 ggccatatat atatatatat atatatctgt atacatatta tatatactta tttacacctg
2461 tgtctatata tttgcccctg tgtattttga atatttgtgt ggacatgttt gcatagcctt
2521 cccattacta agactattac ctagtcataa ttattttttc aatgataatc cttcataatt
2581 tattatacaa tttatcattc agaaagcaat aattaaaaaa gtttacaatg actggaaaga
2641 ttccttgtaa tttgagtata aatgtatttt tgtcttgtgg ccattctttg tagataattt
2701 ctgcacatct gtataagtac ctaagattta gttaaacaaa tatatgactt cagtcaacct
2761 ctctctctaa taatggtttg aaaatgaggt ttgggtaatt gccaatgttg gacagttgat
2821 gtgttcattc ctgggatcct atcatttgaa cagcattgta cataacttgg gggtatgtgt
2881 gcaggattac ccaagaataa cttaagtaga agaaacaaga aagggaatct tgtatatttt
2941 tgttgatagt tcatgttttt cccccagcca caattttacc ggaagggtga caggaaggc
//