LOCUS BC103831 2862 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens Bardet-Biedl syndrome 9, mRNA (cDNA clone MGC:118917
IMAGE:40001794), complete cds.
ACCESSION BC103831
VERSION BC103831.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2862)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2862)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 4, 2006 this sequence version replaced BC103831.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 7 Row: b Column: 18.
FEATURES Location/Qualifiers
source 1..2862
/db_xref="H-InvDB:HIT000337383"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:118917 IMAGE:40001794"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: ATAACAAT sequenced from the reverse primer"
gene 1..2862
/gene="BBS9"
/gene_synonym="B1"
/gene_synonym="C18"
/gene_synonym="D1"
/gene_synonym="PTHB1"
/db_xref="GeneID:27241"
/db_xref="HGNC:HGNC:30000"
/db_xref="MIM:607968"
CDS 134..2797
/gene="BBS9"
/gene_synonym="B1"
/gene_synonym="C18"
/gene_synonym="D1"
/gene_synonym="PTHB1"
/codon_start=1
/product="Bardet-Biedl syndrome 9"
/protein_id="AAI03832.1"
/db_xref="GeneID:27241"
/db_xref="HGNC:HGNC:30000"
/db_xref="MIM:607968"
/translation="MSLFKARDWWSTILGDKEEFDQGCLCLANVDNSGNGQDKIIVGS
FMGYLRIFSPHPAKTGDGAQAEDLLLEVDLRDPVLQVEVGKFVSGTEMLHLAVLHSRK
LCVYSVSGTLGNVEHGNQCQMKLMYEHNLQRTACNMTYGSFGGVKGRDLICIQSMDGM
LMVFEQESYAFGRFLPGFLLPGPLAYSSRTDSFLTVSSCQQVESYKYQVLAFATDADK
RQETEQQKLGSGKRLVVDWTLNIGEQALDICIVSFNQSASSVFVLGERNFFCLKDNGQ
IRFMKKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLKWATQLPHIPVAVR
VGCLHDLKGVIVTLSDDGHLQCSYLGTDPSLFQAPNVQSRELNYDELDVEMKELQKII
KDVNKSQGVWPMTEREDDLNVSVVVSPNFDSVSQATDVEVGTDLVPSVTVKVTLQNRV
ILQKAKLSVYVQPPLELTCDQFTFEFMTPDLTRTVSFSVYLKRSYTPSELEGNAVVSY
SRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASHKITIDTNKSPVSLLSLFPGF
ASQSDDDQVNVMGFHFLGGARITVLASKTSQRYRIQSEQFEDLWLITNELILRLQEYF
EKQGVKDFACSFSGSIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLA
RFKDKTPAPLQHLDTLLDGTYKQVIALADAVEENQGNLFQSFTRLKSATHLVILLIAL
WQKLSADQVAILEAAFLPLQEDTQELGWEETVDAAISHLLKTCLSKSSKEQALNLNSQ
LNIPKDTSQLKKHITLLCDRLSKGGRLCLSTDAAAPQTMVMPGGCTTIPESDLEERSV
EQDSTELFTNHRHLTAETPRPEVSPLQGVSE"
BASE COUNT 826 a 599 c 633 g 804 t
ORIGIN
1 gcaccgtccg ttcttgctcc ctctgctcca tcactgggac cttgtcaggc gttcataaag
61 caaaatttgc cgaacgaggg ttcgcagaaa ggtggggcag agctcatctg acgtggcatc
121 agtgtgaaag aaaatgtctt tatttaaagc ccgtgattgg tggtctacta ttctgggaga
181 taaagaagaa tttgatcaag gctgtttgtg tctggctaat gttgacaata gtggaaatgg
241 acaagataaa ataattgtgg gtagctttat gggataccta aggatcttta gcccccatcc
301 tgcaaaaaca ggagatggag ctcaagccga agatttgctt ctagaagtgg atctacgaga
361 tccagtactt caagtggaag taggaaagtt tgtttcaggt accgaaatgc tacatttggc
421 tgtgttacat tctagaaaac tttgtgtcta ctctgtctca ggaaccttgg gtaatgtgga
481 acatgggaac caatgtcaga tgaaattgat gtatgaacat aatcttcaga gaacagcctg
541 caatatgacc tatggatcat ttggtggtgt aaaaggtcga gatttaattt gcatccagtc
601 tatggatggg atgctgatgg tatttgagca ggagagctat gcttttggaa gatttctccc
661 tggctttctt ctgcctggtc ctcttgccta cagttcccgt acagattcct tccttactgt
721 ctcttcctgc caacaagtgg aaagttataa gtaccaggta cttgcttttg caacagatgc
781 agataaaagg caggagactg aacagcaaaa acttggttct ggaaaaagac tagttgtgga
841 ttggactcta aatattggag agcaagccct tgacatatgt attgtctctt tcaatcagtc
901 ggcatcctct gtttttgttc ttggtgagag aaactttttt tgccttaagg ataatggaca
961 aattcgattc atgaagaagc ttgattggag cccaagttgt tttctgccat attgctcagt
1021 ttctgaagga acaataaata ctttgattgg aaatcataat aacatgctgc atatttatca
1081 agatgtgaca ctgaagtggg ccacccaact tccccacatt cctgtagcag taagagtggg
1141 ctgtttgcat gatttaaagg gagtgatagt cactctgagt gatgatggtc acttgcagtg
1201 ttcatacctg gggacagatc cttctctgtt ccaagctcca aacgttcaat ctcgagaact
1261 aaactatgat gaacttgatg tagaaatgaa agaacttcag aaaatcatca aagatgttaa
1321 caaatcacaa ggtgtttggc ccatgactga gagagaagat gacttgaacg tttctgtcgt
1381 ggtttctcct aactttgatt cagtttctca agcgaccgat gttgaggtgg gaactgacct
1441 tgtcccttct gtcacggtga aggtcacact gcagaacaga gtgatattgc aaaaagccaa
1501 attatcagtc tacgtgcaac caccattaga attgacttgt gatcagttca cctttgaatt
1561 tatgacacca gatttgacta gaacagtaag cttttctgtt tatctgaaaa gaagttatac
1621 accatcagaa ttggaaggaa atgctgttgt ttcttattcc agaccaacag atcgaaatcc
1681 tgatggcatt ccgcgagtta tccaatgtaa atttagactt cccctaaagt taatttgcct
1741 accaggtcag ccttcaaaaa ctgcaagcca caaaattact attgatacca acaaatctcc
1801 agtcagtctt cttagtctct tcccaggttt tgccagtcag tcagatgatg atcaggtgaa
1861 tgtaatgggt tttcacttct taggaggtgc tcgaattact gttcttgctt ccaaaacttc
1921 tcaacgatat cgcattcaga gtgaacaatt tgaagatctt tggctcataa ccaatgagct
1981 tattcttcgc cttcaagaat attttgaaaa acagggagtc aaagattttg catgttcttt
2041 ttcgggatct ataccccttc aagaatattt tgagttgatt gatcatcatt ttgagctacg
2101 gataaatggt gaaaaattag aagaactctt atctgagaga gctgtacaat ttcgggccat
2161 tcaacgccgg ctactagcaa gattcaaaga taaaactcct gcccctcttc aacacctgga
2221 caccttgtta gatggaacct acaagcaggt aattgctcta gcagatgcag tggaggaaaa
2281 ccaaggcaat ctgttccagt cattcaccag gctgaagagt gccacccatt tggtgattct
2341 gctgatcgcg ctgtggcaga agcttagtgc tgaccaggtt gctattctgg aagcggcatt
2401 tctgccgcta caagaagaca ctcaagaatt gggctgggaa gaaacggtgg atgccgccat
2461 ttcccacctg ttgaagactt gcctgtcgaa gagttctaag gagcaggctt tgaacctcaa
2521 cagccagctg aacataccca aagacacaag ccaactgaag aaacatatca ccttgctctg
2581 cgatagatta tccaaaggtg gccgtctctg cctaagtacc gatgcagcag ccccacagac
2641 catggtcatg ccaggtggtt gtactacaat cccagagtca gacctagaag aaagatcagt
2701 agaacaagac tctacagaac tgtttaccaa ccacagacat ctcactgcag agacacccag
2761 gcctgaagtt tcacccctcc aaggagtctc ggaataattc aagtagagtt gtttggttga
2821 gaggaacatc cccatctcaa ggccgaacct gtgtgaacct ca
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