LOCUS BC103721 2139 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens sorting nexin 11, mRNA (cDNA clone MGC:111019
IMAGE:6162638), complete cds.
ACCESSION BC103721
VERSION BC103721.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 232 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111025.
FEATURES Location/Qualifiers
source 1..2139
/db_xref="H-InvDB:HIT000337325"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111019 IMAGE:6162638"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2139
/gene="SNX11"
/db_xref="GeneID:29916"
/db_xref="HGNC:HGNC:14975"
CDS 74..886
/gene="SNX11"
/codon_start=1
/product="sorting nexin 11"
/protein_id="AAI03722.1"
/db_xref="GeneID:29916"
/db_xref="HGNC:HGNC:14975"
/translation="MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHT
NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQG
LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCG
WAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSL
ESPTLPPLSSPLCCDFGRPKEGTSTLQSVRRAVGGDHAVPLDPGQLETVLEK"
BASE COUNT 449 a 520 c 585 g 585 t
ORIGIN
1 gatctggcta tatggtgggg cgcgggcggt gtcgctgtgg ggagctggtg ctgttctcag
61 atgtttcctt ccaatgggct tttggtgtag gatgtcggag aaccaagaac aggaggaggt
121 gattacagtg cgtgttcagg acccccgagt gcagaatgag ggctcctgga actcttatgt
181 ggattataag atattcctcc ataccaacag caaagccttt actgccaaga cttcctgtgt
241 gcggcgccgc taccgtgagt tcgtgtggct gagaaagcag ctacagagaa atgctggttt
301 ggtgcctgtt cctgaacttc ctgggaagtc aaccttcttc ggcacctcag atgagttcat
361 tgagaagcga cgacaaggtc tgcagcactt ccttgaaaag gtcctgcaga gtgtggttct
421 cctgtcagac agccagttgc acctattcct gcaaagccag ctctcggtgc ctgagataga
481 agcctgtgtc cagggccgaa gtaccatgac tgtgtctgat gccattcttc gatatgctat
541 gtcaaactgt ggctgggccc aggaagagag gcagagctct tctcacctgg ctaaaggaga
601 ccagcctaag agttgctgct ttcttccaag atcgggtagg aggagctctc cctcaccgcc
661 tcccagtgaa gaaaaggacc atttagaagt gtgggctcca gttgttgact ctgaggttcc
721 ttccttggaa agtcccactc tcccacccct ctcctcacca ttatgctgtg attttggaag
781 acccaaagag ggaacctcca ctcttcagtc tgtgaggagg gctgtgggag gagatcatgc
841 tgtgcctttg gaccctggtc agttagaaac agttttggaa aagtgagctc tgggttctgc
901 tctgagatgg tcagagaaga tgcgggccag gagacttact caggtgggac tgggcacagg
961 gcaggtatgt gggaggctgg gctgcttagt gtcttctagt cacctctgct tgggctgatt
1021 gacagaggtc agtcattaca gccccttatg cctcttccat gggaacaaat actgtgcaga
1081 tgtttgtaag ttaaacataa gacacagggg ctgttgcttt tgaacagaac cctatattac
1141 tctcctggga tctgagtttc tgcaggtcat ttgtatgtag gaccaggagt atctcctcag
1201 gtgaccagtt ttggggaccc gtatgtggca aattctaagc tgccatattg aacatcatcc
1261 cactgggagt ggttatgttg tatccccatc ttggctggct tcagtttttg ctgtagccct
1321 agagcacttt gtttgtggga ggctggcctc ttgcctacct ccttgcatgg acagggggat
1381 gaatatttac tttcccacct ccttgctttt tctttcactg ataccactga atggaactgg
1441 tgctgtgact cctgctgctg gggatttatg tcccgagacc ttagcctggc tgagtggagc
1501 ctgagacctg cacaacagct catggtcatg catgagagag aagtggctgg ccacagccag
1561 agggaacagt aacagcccag gggcctttat tttgggaaag gctgtcccgg gctgttactg
1621 tctcttctgg ttataaagca gacatgtggc catcttttcc gcagggttag agtgggctcc
1681 tttctttttg gaatcctttt cttctccttt ggtagcagct ccctgcctcc agggcttccg
1741 ccaccagcgt ctctgctgtg ttgcgcagtg cagtggggtg caagggcttt gtttctgcct
1801 gcctgaaaga gagggctctg gggatggaga tgagaaacaa cacgctctcc ttcagacaat
1861 gaggcattct gtcctcctgc tgccattctt catctccact gagagccaga gctggtagga
1921 gccgagtgcc acaggcattc tgcattgctc tactcttagg tttgtgtgtg tgatccttcc
1981 cctccctgtc gcccactcct ccctcctctg gctatcctac cctgtctgtg ggctctttta
2041 ctaccagcct atgctgtggg actgtcatgg catttagttc agagtggagg ggctttggcc
2101 tgaaataaaa tgcaagtatt taaaaaaaaa aaaaaaaaa
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