LOCUS BC103498 2771 bp mRNA linear HUM 21-JAN-2006
DEFINITION Homo sapiens suppressor of variegation 4-20 homolog 1 (Drosophila),
transcript variant 1, mRNA (cDNA clone MGC:118908 IMAGE:40001706),
complete cds.
ACCESSION BC103498
VERSION BC103498.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2771)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2771)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 4 Row: b Column: 15.
FEATURES Location/Qualifiers
source 1..2771
/db_xref="H-InvDB:HIT000337280"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:118908 IMAGE:40001706"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: AATGTA"
gene 1..2771
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
/db_xref="IMGT/GENE-DB:24283"
/db_xref="MIM:24283"
CDS 6..2663
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/codon_start=1
/product="suppressor of variegation 4-20 homolog 1,
isoform 1"
/protein_id="AAI03499.1"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
/db_xref="IMGT/GENE-DB:24283"
/db_xref="MIM:24283"
/translation="MKWLGESKNMVVNGRRNGGKLSNDHQQNQSKLQHTGKDTLKAGK
NAVERRSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNT
SAFPSRSSRHFSKSDSFSHNNPVRFRPIKGRQEELKEVIERFKKDEHLEKAFKCLTSG
EWARHYFLNKNKMQEKLFKEHVFIYLRMFATDSGFEILPCNRYSSEQNGAKIVATKEW
KRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCR
PNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCERRGTGAFKS
RVGLPAPAPVINSKYGLRETDKRLNRLKKLGDSSKNSDSQSVSSNTDADTTQEKNNAT
SNRKSSVGVKKNSKSRTLTRQSMSRIPASSNSTSSKLTHINNSRVPKKLKKPAKPLLS
KIKLRNHCKRLEQKNASRKLEMGNLVLKEPKVVLYKNLPIKKDKEPEGPAQAAVASGC
LTRHAAREHRQNPVRGAHSQGESSPCTYITRRSVRTRTNLKEASDIKLEPNTLNGYKS
SVTEPCPDSGEQLQPAPVLQEEELAHETAQKGEAKCHKSDTGMSKKKSRQGKLVKQFA
KIEESTPVHDSPGKDDAVPDLMGPHSDQGEHSGTVGVPVSYTDCAPSPVGCSVVTSDS
FKTKDSFRTAKSKKKRRITRYDAQLILENNSGIPKLTLRRRHDSSSKTNDQENDGMNS
SKISIKLSKDHDNDNNLYVAKLNNGFNSGSGSSSTKLKIQLKRDEENRGSYTEGLHEN
GVCCSDPLSLLESRMEVDDYSQYEEESTDDSSSSEGDEEEDDYDDDFEDDFIPLPPAK
RLRLIVGKDSIDIDISSRRREDQSLRLNA"
BASE COUNT 940 a 523 c 650 g 658 t
ORIGIN
1 tgggtatgaa gtggttggga gaatccaaga acatggtggt gaatggcagg agaaatggag
61 gcaagttgtc taatgaccat cagcagaatc aatcaaaatt acagcacacg gggaaggaca
121 ccctgaaggc tggcaaaaat gcagtcgaga ggaggtcgaa cagatgtaat ggtaactcgg
181 gatttgaagg acagagtcgc tatgtaccat cctctggaat gtccgccaag gaactctgtg
241 aaaatgatga cctagcaacc agtttggttc ttgatcccta tttaggtttt caaacacaca
301 aaatgaatac tagcgccttt ccttcgagga gctcaaggca tttttcaaaa tctgacagtt
361 tttctcacaa caaccctgtg agatttaggc ctattaaagg aaggcaggaa gaactaaagg
421 aagtaattga acgttttaag aaagatgaac acttggagaa agccttcaaa tgtttgactt
481 caggcgaatg ggcacggcac tattttctca acaagaataa aatgcaggag aaattattca
541 aagaacatgt atttatttat ttgcgaatgt ttgcaactga cagtggattt gaaatattgc
601 catgtaatag atactcatca gaacaaaatg gagccaaaat agttgcaaca aaagagtgga
661 aacgaaatga caaaatagaa ttactggtgg gttgtattgc cgaactttca gaaattgagg
721 agaacatgct acttagacat ggagaaaacg acttcagtgt catgtactcc acaaggaaaa
781 actgtgctca actctggctg ggtcctgctg cgtttataaa ccatgattgc agacctaatt
841 gtaagtttgt gtcaactggt cgagatacag catgtgtgaa ggctctaaga gacattgaac
901 ctggagaaga aatttcttgt tattatggag atgggttctt tggagaaaat aatgagttct
961 gcgagtgtta cacttgcgaa agacggggca ctggtgcttt taaatccaga gtgggactgc
1021 ctgcgcctgc tcctgttatc aatagcaaat atggactcag agaaacagat aaacgtttaa
1081 ataggcttaa aaagttaggt gacagcagca aaaattcaga cagtcaatct gtcagctcta
1141 acactgatgc agataccact caggaaaaaa acaatgcaac ttctaaccga aaatcttcag
1201 ttggcgtaaa aaagaatagc aagagcagaa cgttaacgag gcaatctatg tcaagaattc
1261 cagcttcttc caactctacc tcatctaagc taactcatat aaataattcc agggtaccaa
1321 agaaactgaa gaagcctgca aagcctttac tttcaaagat aaaattgaga aatcattgca
1381 agcggctgga gcaaaagaat gcttcaagaa aactcgaaat gggaaactta gtactgaaag
1441 agcctaaagt agttctgtat aaaaatttgc ccattaaaaa agataaggag ccagagggac
1501 cagcccaagc cgcagttgcc agcgggtgct tgactagaca cgcggcgaga gaacacagac
1561 agaatcctgt gagaggtgct cattcgcagg gggagagctc gccctgcacc tacataactc
1621 ggcggtcagt gaggacaaga acaaatctga aggaggcctc tgacatcaag cttgaaccaa
1681 atacgttgaa tggctataaa agcagtgtga cggaaccttg ccccgacagt ggtgaacagc
1741 tgcagccagc tcctgtgctg caggaggaag aactggctca tgagactgca caaaaagggg
1801 aggcaaagtg tcataagagt gacacaggca tgtccaaaaa gaagtcacga caaggaaaac
1861 ttgtgaaaca gtttgcaaaa atagaggaat ctactccagt gcacgattct cctggaaaag
1921 acgacgcggt accagatttg atgggtcccc attctgacca gggtgagcac agtggcactg
1981 tgggcgtgcc tgtgagctac acagactgtg ctccttcacc cgtcggttgt tcagttgtga
2041 catcagatag cttcaaaaca aaagacagct ttagaactgc aaaaagtaaa aagaagaggc
2101 gaatcacaag gtatgatgca cagttaatcc tagaaaataa ctctgggatt cccaaattga
2161 ctcttcgtag gcgtcatgat agcagcagca aaacaaatga ccaagagaat gatggaatga
2221 actcttccaa aataagcatc aagttaagca aagaccatga caacgataac aatctctatg
2281 tagcaaagct taataatgga tttaactcag gatcaggcag tagttctaca aaattaaaaa
2341 tccagctaaa acgagatgag gaaaataggg ggtcttatac agaggggctt catgaaaatg
2401 gggtgtgctg cagtgatcct ctttctctct tggagtctcg aatggaggtg gatgactata
2461 gtcagtatga ggaagaaagt acagatgatt cctcctcttc tgagggcgat gaagaggagg
2521 atgactatga tgatgacttt gaagacgatt ttattcctct tcctccagct aagcgcttga
2581 ggttaatagt tggaaaagac tctatagata ttgacatttc ttcaaggaga agagaagatc
2641 agtctttaag gcttaatgcc taagctcttg gtcttaactt gacctgggat aactacttta
2701 aagaaataaa aaattccagt caattattcc tcaactgaaa gtttagtggc agcacttcta
2761 ttgtcccttc a
//