LOCUS BC102766 2178 bp mRNA linear MAM 16-FEB-2007
DEFINITION Bos taurus interferon regulatory factor 1, mRNA (cDNA clone
MGC:127194 IMAGE:7945954), complete cds.
ACCESSION BC102766
VERSION BC102766.1
KEYWORDS MGC.
SOURCE Bos taurus (cattle)
ORGANISM Bos taurus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
REFERENCE 1 (bases 1 to 2178)
AUTHORS Moore,S., Alexander,L., Brownstein,M., Guan,L., Lobo,S., Meng,Y.,
Tanaguchi,M., Wang,Z., Yu,J., Prange,C., Schreiber,K., Shenmen,C.,
Wagner,L., Bala,M., Barbazuk,S., Barber,S., Babakaiff,R.,
Beland,J., Chun,E., Del Rio,L., Gibson,S., Hanson,R.,
Kirkpatrick,R., Liu,J., Matsuo,C., Mayo,M., Santos,R.R., Stott,J.,
Tsai,M., Wong,D., Siddiqui,A., Holt,R., Jones,S.J. and Marra,M.A.
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2005) BC Cancer Agency, Canada's Michael Smith
Genome Sciences Centre, Suite 100, 570 West 7th Avenue, Vancouver,
British Columbia V5Z 4S6, Canada
REMARK NIH-MGC Project
COMMENT Contact: Robert Kirkpatrick
Canada's Michael Smith Genome Sciences Centre
BC Cancer Agency
Suite 100, 570 West 7th Avenue, Vancouver, British Columbia,
Canada, V5Z 4S6
Tel: 1-604-707-5900 x5406
Fax: 1-604-876-3561
Email: robertk@bcgsc.ca
Tissue Procurement: M. Taniguchi, Y. Meng, L. Guan and S. Moore,
University of Alberta
cDNA Library Preparation: M. Masaaki, Y. Meng, S. Lobo, L. Guan
and Dr. S. Moore
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Bovine Genome Sequencing Program, Genome
Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Moore S, Alexander L, Brownstein M, Guan L, Lobo S, Meng Y,
Taniguchi M, Wang Z, Prange C, Schreiber K, Shenmen C, Wagner L,
Ali J, Bala M, Barber S, Babakaiff R, Beland J, Chand S, Chun E,
Del Rio L, Gibson S, Kirkpatrick R, Liu J, Matsuo C, Mayo M,
Palmquist D, Santos RR, Stott J, Tsai M, Wong D, Wynhoven B, Hanson
R, Siddiqui A, Holt R, Jones SJ, Marra MA
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 240 Row: m Column: 9.
FEATURES Location/Qualifiers
source 1..2178
/organism="Bos taurus"
/mol_type="mRNA"
/strain="Crossbred x Angus"
/db_xref="taxon:9913"
/clone="MGC:127194 IMAGE:7945954"
/tissue_type="Ileum, crossbred X Angus female calf, 6
months old."
/clone_lib="GC_BGC-02"
/lab_host="XL10-Gold"
/note="Vector: pCMV-SPORT6.0"
gene 1..2178
/gene="IRF1"
/db_xref="GeneID:337917"
CDS 234..1202
/gene="IRF1"
/codon_start=1
/product="interferon regulatory factor 1"
/protein_id="AAI02767.1"
/db_xref="GeneID:337917"
/translation="MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKG
SSAVRVYRMLPPLTKSQRKERKSKSSRDARSKAKKKPYGEYSPDTFSDGLSSSTLPDD
HSNYTVRSYMGQDLDIERTLTPALSPCGVSSTLPNWSIPVEIVPDSTSDLYNFQVSPM
PSTSEAATDEDEEGKLTEDIMKLLEQTGWQQTSVDGKGYLLNEPGAQPTSVYGEFSCK
EEPEVDSPGGYIGLISSDMKNMDPSLLDSLLTPVRLPSIQAIPCAP"
BASE COUNT 585 a 580 c 579 g 434 t
ORIGIN
1 gaggcagagc gcgccactcc ttcgtcgagg caggacgtgc gcccaagtcg ggctagtaga
61 ggccagcgag agccgtgcca agtcaaggcc agccgtgacc agcggctccg cgacctgggc
121 atcctctgcc ttctccctgt tcccacttga atcgcgctcc tagcgcccgc aaaagcagtc
181 ctcgccggga tcctcggttg ctgccgtcgg gtagcgcttg ctgtcgagcc aacatgccca
241 tcactcggat gcgcatgaga ccttggctag agatgcagat taattccaac caaatcccag
301 ggctgatctg gattaataaa gaggagatga tcttccagat cccatggaag cacgctgcga
361 agcatggctg ggacatcaac aaggatgcct gtctgtttcg gagctgggcc attcacacag
421 gccgatacaa agcaggggaa aaggagccgg atcccaagac ctggaaggcc aactttcgct
481 gcgccatgaa ctcgctgcca gatattgagg aggtgaagga ccagagcagg aacaagggca
541 gttcagctgt gcgggtgtac cggatgctcc cacccctcac caagagccag aggaaagaga
601 gaaagtccaa gtccagccga gacgctagga gcaaggccaa gaagaagcca tatggggaat
661 acagccccga taccttctct gatggactca gtagctccac cctgcctgat gaccacagca
721 actacacagt tcgcagctac atggggcagg acctggacat cgaacggact ctcactccag
781 cgctgtcacc gtgtggcgtc agtagcactc tccctaactg gtccattccg gtggaaattg
841 tgccagacag caccagcgac ctgtacaact ttcaggtgtc gcccatgccc tccacctctg
901 aagctgcaac agatgaggac gaggaaggga aattaactga ggacatcatg aagctcttgg
961 agcaaacagg gtggcagcag acaagcgtgg atgggaaggg gtatctgctt aatgaacctg
1021 gggcccagcc cacctctgtc tatggagagt tcagttgcaa ggaggagcca gaagttgaca
1081 gccctggggg ttatattggc ctgatatctt cagatatgaa gaacatggat cccagcttgt
1141 tggacagcct gctcacccca gtcaggctgc cctccatcca ggccattcct tgcgcaccat
1201 agatgggccc cctgaccccc tttgactcct ttaggcgaca gggcctggca tcatggtggc
1261 tgtggtgcaa agaagcagga atgctgcggc cccttgatat gatgaagtgt gaccccactg
1321 ctgaccaagg atgggtcttt ccgactcggg acagcggcct cttgcagtcc ggcagggcag
1381 ggtctggact catcttgtgg ggtgaagctg gccctgcctc tggggaagat ggagttctga
1441 gactggtgtg tcaggtggca gtctcagaca ggagtcagcc tccagctttc cccttggagc
1501 cccactgcct ggagagggtt ttgctattcc tgagctggcc caagagaacg gaccagtgac
1561 ctcagaaaac ggcaccacct ccagggctgg ctctgcacta agagacaatt gcactaagtg
1621 aatcctgttc ccaaagtaac cgcctccctt cctagatgag ccctggggac tgttccaacg
1681 ccagtgaaat gtgaaggaag aatggggtcc ctgtgggaca gtgccccctc tgcctcagag
1741 gagctctgcc ctgctccctg cctaggctga ggggcttgtg aaaaaacctg gcactttttc
1801 ttgtggacct tgccacattt ctgatcagag gtgtacacta acgttttccc aagctcttgg
1861 catttgcatt tatttatact gtgccttgcc ctgcaaccac atgccccctc aggcaggccc
1921 cggcagcccc cagcaggccc agggaggcag gcgtgagcgc cttggtgtga tttaaaattg
1981 gaagtatcat ctgaccacta agtcatgtgt gaccacacat gtacatgtat gtaaatatgt
2041 acatttgtct ttttataaaa attgtattgt ttataaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 agaaaaaaaa aaaaaaaa
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