LOCUS BC101973 690 bp mRNA linear HUM 03-NOV-2005
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide 1, mRNA (cDNA clone IMAGE:40003125), partial cds.
ACCESSION BC101973
VERSION BC101973.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 690)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 690)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 12 Row: e Column: 5.
FEATURES Location/Qualifiers
source 1..690
/db_xref="H-InvDB:HIT000337204"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40003125"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_283"
/note="Vector: pCR-Blunt II-TOPO with reversed insert;
Clone identification sequence tag: GAGGTTA"
gene 1..>690
/gene="APOBEC1"
/gene_synonym="apobec-1"
/gene_synonym="BEDP"
/gene_synonym="CDAR1"
/db_xref="GeneID:339"
/db_xref="HGNC:HGNC:604"
/db_xref="IMGT/GENE-DB:604"
/db_xref="MIM:600130"
CDS 22..>690
/gene="APOBEC1"
/gene_synonym="apobec-1"
/gene_synonym="BEDP"
/gene_synonym="CDAR1"
/codon_start=1
/product="APOBEC1 protein"
/protein_id="AAI01974.1"
/db_xref="GeneID:339"
/db_xref="HGNC:HGNC:604"
/db_xref="IMGT/GENE-DB:604"
/db_xref="MIM:600130"
/translation="MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKW
GMSRKIWRSSGKNTTNHVEVNFIKKFTSERDFHPSISCSITWFLSWSPCWECSQAIRE
FLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYP
PGDEAHWPQYPPLWMMLYALELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTI
PPHIL"
BASE COUNT 193 a 169 c 151 g 177 t
ORIGIN
1 gaagttcaga gacagagcac catgacttct gagaaaggtc cttcaaccgg tgaccccact
61 ctgaggagaa gaatcgaacc ctgggagttt gacgtcttct atgaccccag agaacttcgt
121 aaagaggcct gtctgctcta cgaaatcaag tggggcatga gccggaagat ctggcgaagc
181 tcaggcaaaa acaccaccaa tcacgtggaa gttaatttta taaaaaaatt tacgtcagaa
241 agagattttc acccatccat cagctgctcc atcacctggt tcttgtcctg gagtccctgc
301 tgggaatgct cccaggctat tagagagttt ctgagtcggc accctggtgt gactctagtg
361 atctacgtag ctcggctttt ttggcacatg gatcaacaaa atcggcaagg tctcagggac
421 cttgttaaca gtggagtaac tattcagatt atgagagcat cagagtatta tcactgctgg
481 aggaattttg tcaactaccc acctggggat gaagctcact ggccacaata cccacctctg
541 tggatgatgt tgtacgcact ggagctgcac tgcataattc taagtcttcc accctgttta
601 aagatttcaa gaagatggca aaatcatctt acatttttca gacttcatct tcaaaactgc
661 cattaccaaa cgattccgcc acacatcctt
//