LOCUS BC101972 687 bp mRNA linear HUM 03-NOV-2005
DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic
polypeptide 1, mRNA (cDNA clone IMAGE:40003128), partial cds.
ACCESSION BC101972
VERSION BC101972.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 687)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 687)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAM Plate: 12 Row: e Column: 1.
FEATURES Location/Qualifiers
source 1..687
/db_xref="H-InvDB:HIT000337203"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:40003128"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_282"
/note="Vector: pCR-Blunt II-TOPO; Clone identification
sequence tag: GGTTGGGC"
gene 1..>687
/gene="APOBEC1"
/gene_synonym="apobec-1"
/gene_synonym="BEDP"
/gene_synonym="CDAR1"
/db_xref="GeneID:339"
/db_xref="HGNC:HGNC:604"
/db_xref="IMGT/GENE-DB:604"
/db_xref="MIM:600130"
CDS 19..>687
/gene="APOBEC1"
/gene_synonym="apobec-1"
/gene_synonym="BEDP"
/gene_synonym="CDAR1"
/codon_start=1
/product="APOBEC1 protein"
/protein_id="AAI01973.1"
/db_xref="GeneID:339"
/db_xref="HGNC:HGNC:604"
/db_xref="IMGT/GENE-DB:604"
/db_xref="MIM:600130"
/translation="MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKW
GMSRKIWRSSGKNTTNHVEVNFIKKFTSERDFHPSISCSITWFLSWSPCWECSQAIRE
FLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYP
PGDEAHWPQYPPLWMMLYALELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTI
PPHIL"
BASE COUNT 191 a 170 c 150 g 176 t
ORIGIN
1 gtccagagac agagcaccat gacttctgag aaaggtcctt caaccggtga ccccactctg
61 aggagaagaa tcgaaccctg ggagtttgac gtcttctatg accccagaga acttcgtaaa
121 gaggcctgtc tgctctacga aatcaagtgg ggcatgagcc ggaagatctg gcgaagctca
181 ggcaaaaaca ccaccaatca cgtggaagtt aattttataa aaaaatttac gtcagaaaga
241 gattttcacc catccatcag ctgctccatc acctggttct tgtcctggag tccctgctgg
301 gaatgctccc aggctattag agagtttctg agtcggcacc ctggtgtgac tctagtgatc
361 tacgtagctc ggcttttttg gcacatggat caacaaaatc ggcaaggtct cagggacctt
421 gttaacagtg gagtaactat tcagattatg agagcatcag agtattatca ctgctggagg
481 aattttgtca actacccacc tggggatgaa gctcactggc cacaataccc acctctgtgg
541 atgatgttgt acgcactgga gctgcactgc ataattctaa gtcttccacc ctgtttaaag
601 atttcaagaa gatggcaaaa tcatcttaca tttttcagac ttcatcttca aaactgccat
661 taccaaacga ttccgccaca catcctt
//