LOCUS BC101805 2557 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens protocadherin gamma subfamily B, 2, mRNA (cDNA clone
MGC:126854 IMAGE:8069311), complete cds.
ACCESSION BC101805
VERSION BC101805.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2557)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2557)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 2 Row: O Column: 5.
FEATURES Location/Qualifiers
source 1..2557
/db_xref="H-InvDB:HIT000337152"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126854 IMAGE:8069311"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_307"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TGTGCAGC"
gene 1..2557
/gene="PCDHGB2"
/gene_synonym="PCDH-GAMMA-B2"
/db_xref="GeneID:56103"
/db_xref="HGNC:HGNC:8709"
/db_xref="MIM:606300"
CDS 64..2499
/gene="PCDHGB2"
/gene_synonym="PCDH-GAMMA-B2"
/codon_start=1
/product="protocadherin gamma subfamily B, 2"
/protein_id="AAI01806.1"
/db_xref="GeneID:56103"
/db_xref="HGNC:HGNC:8709"
/db_xref="MIM:606300"
/translation="MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKN
SVVGNLAKDLGLSVRDLPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLC
VLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDS
DVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGG
DPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAE
ITYSFHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQ
VEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKF
ILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNAP
VFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVSVS
AQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPA
LGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTG
EVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPS
DPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGVL
PNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDLVCDNASWEQNTNHGAAGV
PFASDTILKVSFN"
BASE COUNT 619 a 700 c 656 g 582 t
ORIGIN
1 ggattctgcc atccccggaa ggcttattcc tcctatgggc aaaggagcaa agggagccag
61 aagatgaaag cgagctcagg gaggtgcggg ctggtgcggt ggctgcaggt actgttgccc
121 ttcctgttgt ctttgttccc cggggctctc ccagtccaga tccgctattc aattccagag
181 gagctggcca aaaactcggt cgtaggaaac ctcgccaagg atctggggct cagcgtccgg
241 gacttgccag cccggaagct gcgggttagc gcggagaagg aatatttcac agtaaaccca
301 gaaagcggag acttacttgt gagtgacaga atagaccgag aacagatatg cgggaagcag
361 cctctgtgtg ttctggattt cgatactgtc gctgaaaatc cactaaatat tttctacata
421 gcagtaattg tgcaggatat aaatgataat accccgctat tcaaacagac taagattaat
481 ttaaaaattg gcgaatccac taagccaggt acaacatttc cacttgaccc agccctggat
541 tcagatgttg gtcctaactc actacaaaga taccacctta atgacaacga gtactttgat
601 ctcgctgaga aacagactcc agatggtcgt aaatatcctg agttgattct aaaacactct
661 ctggacagag aagagcacag tttacatcaa ttggtcctca cagctgtgga tggcggagac
721 ccacctcaaa gtggcacgac ccaaatccga atcaaagtca cggatgccaa cgataaccct
781 ccagtgttca gccaggacgt gtacagggtc accctgaggg aggacgtgcc gccgggcttc
841 tttgtgcttc aagtgacagc caccgaccgg gatgaaggca taaacgcaga gatcacctac
901 tcctttcata atgtggacga acaagtgaaa cactttttca acttaaatga aaaaacagga
961 gaaatcacga caaaggatga tttggatttt gagattgcaa gtagttacac tctgagtatc
1021 gaagcaaaag atcctggaga tctagcagcc cactgcagta tccaagttga aattcttgat
1081 gacaacgatt gtgcacctga agttattgtg acttcagtat ctactcccct accggaggat
1141 tcgccaccag gaacagtgat cgccttgata aaaacgagag acagagactc tggagaaaat
1201 ggagaagttt actgccaagt gttgggaaat gccaagttta ttttgaaatc ttcctcaaag
1261 aactattaca aactagtgac agacggcgct ctggaccggg aggagatccc agaatacaat
1321 ctcaccatca cagccaccga cgggggcaag ccgcccctct cctccagcat aattgtcacc
1381 ctgcacatct ccgacgtcaa cgataatgcc ccagttttcc aacagacttc ctacatggtt
1441 cacgtggcag agaacaatcc tcctggcgcc tctatcgctc aaatcagtgc ctctgaccct
1501 gacttgggcc ccagtggcca agtttcctac tccatcgtag cgagcgacct gaagccgcgg
1561 gagattttat cctacgtgtc cgtgagcgcg cagagcgggg tggtgttcgc gcagcgcgcc
1621 ttcgatcatg agcagctgcg cgccttcgag ctcacactgc aggcccgcga ccagggctcg
1681 cccgcgctca gcgccaacgt gagcctgcgc gtgttagtgg gcgacctcaa tgacaatgcg
1741 ccacgggtgc tgtaccccgc gctggggcct gatggctccg ccctcttcga tatggtgcca
1801 cgcgccgcag agcccggcta cctggtgacc aaggtggtgg cggtggacgc agactcagga
1861 cacaacgctt ggctgtccta ccacgtgctg caggccagcg agcccgggct cttcagcctg
1921 gggttgcgca cgggtgaggt gcgcacagcg cgtgccttgg gcgacaggga cgcggcccgc
1981 cagcgcctgc tggtcgctgt gcgtgatgga ggacagccgc cactctccgc tacggccacg
2041 ctgcacctaa tcttcgcgga tagcctgcaa gaggtattgc cagacctcag cgaccgccgg
2101 gagccctctg acccccaggc aaaactgcag ttttacctgg ttgtggcctt ggccttgatc
2161 tcagtgctct tcttcctcgc ggtgattctg gcaatctccc tgcgcctgcg actctcttcc
2221 aggtcagatg cttgggactg ttttcagcct ggtctcagct ccaagcctgg acctggggtt
2281 ctccccaatt acagtgaggg tacattgccc tattcctaca acctgtgtgt tgcctcacaa
2341 tcagccaaga cagagttcaa ttttctgaac ataaccccgg aattggttcc cgcgcaagat
2401 ctcgtctgtg acaatgcctc ttgggaacaa aatacaaatc atggagccgc tggggtccct
2461 tttgcctcag atactatttt gaaggtgagc tttaattaat ttattttcac ttctggtttt
2521 attgtttcac ctaatttggg taggaagttc cactgcg
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