LOCUS BC101720 2169 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens highly divergent homeobox, mRNA (cDNA clone MGC:126769
IMAGE:8069226), complete cds.
ACCESSION BC101720
VERSION BC101720.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2169)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2169)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mike Brownstein, NIMH
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCB Plate: 2 Row: K Column: 16.
FEATURES Location/Qualifiers
source 1..2169
/db_xref="H-InvDB:HIT000337072"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:126769 IMAGE:8069226"
/tissue_type="Lung and heart, PCR rescued clones"
/clone_lib="NIH_MGC_315"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: TGCACACC"
gene 1..2169
/gene="HDX"
/gene_synonym="D030011N01Rik"
/db_xref="GeneID:139324"
/db_xref="HGNC:HGNC:26411"
CDS 51..2123
/gene="HDX"
/gene_synonym="D030011N01Rik"
/codon_start=1
/product="highly divergent homeobox"
/protein_id="AAI01721.1"
/db_xref="GeneID:139324"
/db_xref="HGNC:HGNC:26411"
/translation="MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLD
FSVVRTWVGNKRRKMSSKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSAN
NDVIVTGIYSPASSSSRQGTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVA
HCKNASLLLGEKTIILSRQTSVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHR
PCKIEPVGIQRSYKPEHTGPALHNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQR
ILGGNAPQKPSSAEGNCLSIAMETGDAEDEYAREEELASMRAQIPSYSRFYESGSSLR
AENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYSNTNP
LRSNFSPHFASSNQLRLSQNQNNYQISGNLTVPWITGCSRKRALQDRTQFSDRDLATL
KKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIEVPPPRGGP
ADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARA
HKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENELEIQKQ
KYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTSFSVSSLS
EKNVSESL"
BASE COUNT 743 a 424 c 461 g 541 t
ORIGIN
1 ggcctgatct gggttccgct gattcctttc gtaaccgcac cacacccgag atgaatctac
61 gttctgtatt tactgtagaa caacaaagga ttttacagcg ttattatgaa aatggaatga
121 caaatcaaag taaaaattgc tttcagctca tattacagtg tgcacaggag actaagctgg
181 acttcagtgt agtcaggacg tgggttggca ataagagaag aaagatgagt agtaagaact
241 ctgaatctgg aacagcaaca acaggaacct ctttgtcagc tccagacatc acagtcagaa
301 atgtggttaa tattgctcga ccctcaagcc agcagtcttc ttggacatct gccaataatg
361 atgtcattgt aactggtata tacagtccag ccagttcatc aagtaggcaa ggaacaaaca
421 aacatacaga cacacaaatt acagaagcac ataaaatccc tattcagaaa acagccacta
481 aaaatgatac tgagtttcag ttacacattc ctgtccaaag acaagtagca cactgtaaaa
541 atgcttccct actcctaggt gaaaaaacaa ttattttgtc aagacagaca agtgtgctaa
601 atgctggaaa ctcagtattc aatcacgcaa agaaaaacta tggaaactct tcagtacaag
661 cttctgaaat gacagtacct caaaagcctt ctgtgtgcca ccgaccttgt aaaattgaac
721 cagttgggat tcaaaggtca tataagcctg aacacacagg cccagcatta cataacttat
781 gtgggcaaaa gccaactatt agagaccctt actgtagaac acaaaacttg gaaatccgtg
841 aagtgttttc attggcagtt agcgattacc cccagagaat tctgggagga aatgccccac
901 agaagcctag ctcagcagaa ggaaattgtt tgtccattgc aatggagact ggagatgctg
961 aggatgaata tgccagagag gaagagctgg catcgatgag agcacagata ccaagctatt
1021 cgagatttta tgaaagtggc agttcccttc gagctgagaa ccaaagtaca accttgcccg
1081 gaccaggaag aaatatgcca aattcacaaa tggtgaatat tagagatatg tcagacaatg
1141 tactgtatca aaacagaaac taccatttga caccacggac ctcattacat acagcatcta
1201 gtacaatgta cagtaatacc aatccattac ggagtaattt ttctcctcat tttgcatcat
1261 caaaccaatt gagattatca caaaaccaaa acaattacca gatttcagga aaccttactg
1321 tgccttggat tacagggtgt tctagaaaaa gagcactaca ggaccgcact cagttcagtg
1381 accgagactt agccaccctt aagaagtatt gggacaatgg catgaccagc ctgggctctg
1441 tttgtagaga gaaaattgaa gctgtggcaa ctgaattaaa tgttgactgt gaaatagttc
1501 ggacttggat tgggaatcga agaaggaaat atcgtttaat ggggattgaa gttccacctc
1561 caagaggagg ccctgctgat ttctctgagc agcctgagtc tggttcttta tctgcactca
1621 caccaggaga ggaagctggg cctgaagtag gagaggataa tgacagaaat gatgaagtat
1681 ccatctgttt gtctgaagga agctctcaag aagagcccaa tgaagttgtt ccgaatgatg
1741 caagggctca taaggaagag gaccaccatg cagtaaccac agataatgtg aaaatagaaa
1801 ttattgatga tgaagaaagt gacatgataa gtaattctga agtagaacaa gtaaactctt
1861 tcttggatta taagaatgaa gaagtcaaat tcattgaaaa tgagctcgag attcaaaagc
1921 aaaaatactt taaacttcag acttttgtta gaagcttgat attagcaatg aaagctgatg
1981 ataaggaaca acagcaggca ctgctgtcag atttacctcc tgaattagag gaaatggatt
2041 tcaatcatgc ctcactggag cctgatgata cctcattcag tgtatcttct ttgtcagaga
2101 aaaatgtctc agaaagtttg tgatttcagt tggagggaat atatgataca gtcttttggc
2161 ttcgtaaca
//